1 Response_reg#1
4-113 aa · 110 aa · 48.9% of protein
Raw token
Response_reg:4:2.43e-41:113:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CGS59_RS08220
Response regulator OmpR family
Faecalibacterium prausnitzii · GCF_002550015
ClassRRTypeOmpRLength225 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002550015#CGS59_RS08220Stable P2CS identifier used across views.
GenomeGCF_002550015Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length225 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 225 aa (81.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa225 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
145-218 aa · 74 aa · 32.9% of protein
Raw token
Trans_reg_C:145:4.52e-23:218:76:77- Raw architecture: Response_reg:4:2.43e-41:113:110:111#Trans_reg_C:145:4.52e-23:218:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002550015::NZ_NMTZ01000019.1::G00030
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span156153-157975Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCGS59_08200RefSeq proteinWP_097779571.1
Context group ID
GCF_002550015::NZ_NMTZ01000019.1::G00030Context members
CGS59_RS08220CGS59_RS08225
Partner locus tags
CGS59_RS08220CGS59_RS08225
Partner old locus tags
CGS59_08200CGS59_08205
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_097779571.1Primary protein accession used for annex mappings.
UniProt accessionA0A2A7AY23Primary UniProt accession resolved in the annex database.
UniProt IDA0A2A7AY23_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCGS59_RS08220Primary locus identifier stored in the genes table.
Old locus tagCGS59_08200Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NMTZ01000019.1Sequence record reported by the local genomic context database.
Genomic interval156 153-156 830 nt678 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span156 153-157 975 ntGCF_002550015::NZ_NMTZ01000019.1::G00030
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002550015::NZ_NMTZ01000019.1::G00030Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NMTZ01000019.1All displayed genes belong to this local TCS context.
Neighborhood span156 153-157 975 nt1 823 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
156 153 nt157 975 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CGS59_RS08220GCF_002550015#CGS59_RS08220
RROmpRCurrent focus
156 153-156 830 nt · Forward (+)
CGS59_RS08225GCF_002550015#CGS59_RS08225
HKClassic
156 827-157 975 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002550015#CGS59_RS08220The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1476335
Simplified PFAM architecture for RROC_1476335
PFAM domain coverage: 184 / 225 aa (81.8%)
1 aa225 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[145-218]
- Domain count: 2
- Matched identifier: RROC_1476335
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 145-218 ; Trans_reg_C 145-218
Cluster members and taxonomy
Representative gene: GCF_002550015#CGS59_RS08220
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_002550015
AssemblyASM255001v1 · Scaffoldhaploid
Genome composition2 915 240 bp · 56,5% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 49 · HK 23 · RR 25CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key