1 Response_reg#1
3-113 aa · 111 aa · 39.5% of protein
Raw token
Response_reg:3:6.58e-22:113:117:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CGS59_RS08165
Response regulator, unclassified
Faecalibacterium prausnitzii · GCF_002550015
ClassRRTypeunclassifiedLength281 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002550015#CGS59_RS08165Stable P2CS identifier used across views.
GenomeGCF_002550015Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length281 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage111 / 281 aa (39.5%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa281 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:3:6.58e-22:113:117:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002550015::NZ_NMTZ01000019.1::G00029
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span146022-146867Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCGS59_08145RefSeq proteinWP_055185815.1
Context group ID
GCF_002550015::NZ_NMTZ01000019.1::G00029Context members
CGS59_RS08165
Partner locus tags
CGS59_RS08165
Partner old locus tags
CGS59_08145
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055185815.1Primary protein accession used for annex mappings.
UniProt accessionA0ABV1AUX5Primary UniProt accession resolved in the annex database.
UniProt IDA0ABV1AUX5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCGS59_RS08165Primary locus identifier stored in the genes table.
Old locus tagCGS59_08145Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NMTZ01000019.1Sequence record reported by the local genomic context database.
Genomic interval146 022-146 867 nt846 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span146 022-146 867 ntGCF_002550015::NZ_NMTZ01000019.1::G00029
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002550015::NZ_NMTZ01000019.1::G00029Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NMTZ01000019.1All displayed genes belong to this local TCS context.
Neighborhood span146 022-146 867 nt846 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
146 022 nt146 867 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CGS59_RS08165GCF_002550015#CGS59_RS08165
RRunclassifiedCurrent focus
146 022-146 867 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406255#AYV37_RS06145Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_0595578
Simplified PFAM architecture for RROC_0595578
PFAM domain coverage: 110 / 281 aa (39.1%)
1 aa281 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[3-112]
- Domain count: 1
- Matched identifier: RROC_0595578
- Positioned domains: Response_reg 3-112 ; Response_reg 3-112
Cluster members and taxonomy
Representative gene: GCF_001406255#AYV37_RS06145
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_002550015
AssemblyASM255001v1 · Scaffoldhaploid
Genome composition2 915 240 bp · 56,5% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 49 · HK 23 · RR 25CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key