1 HAMP#1
176-247 aa · 72 aa · 15.2% of protein
Raw token
HAMP:176:0.0000000000297:247:72:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CGS59_RS04880
Histidine kinase, Classic
Faecalibacterium prausnitzii · GCF_002550015
ClassHKTypeClassicLength474 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002550015#CGS59_RS04880Stable P2CS identifier used across views.
GenomeGCF_002550015Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length474 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage247 / 474 aa (52.1%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa474 aa
Domain-by-domain annotation3 items
2 HisKA#2
251-318 aa · 68 aa · 14.3% of protein
Raw token
HisKA:251:7.43e-19:318:68:643 HATPase_c#3
364-470 aa · 107 aa · 22.6% of protein
Raw token
HATPase_c:364:3.84e-30:470:108:109- Raw architecture: HAMP:176:0.0000000000297:247:72:69#HisKA:251:7.43e-19:318:68:64#HATPase_c:364:3.84e-30:470:108:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002550015::NZ_NMTZ01000013.1::G00025
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span116906-119125Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCGS59_04865RefSeq proteinWP_097779118.1
Context group ID
GCF_002550015::NZ_NMTZ01000013.1::G00025Context members
CGS59_RS04875CGS59_RS04880
Partner locus tags
CGS59_RS04875CGS59_RS04880
Partner old locus tags
CGS59_04860CGS59_04865
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_097779118.1Primary protein accession used for annex mappings.
UniProt accessionA0A2A7AZL3Primary UniProt accession resolved in the annex database.
UniProt IDA0A2A7AZL3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCGS59_RS04880Primary locus identifier stored in the genes table.
Old locus tagCGS59_04865Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NMTZ01000013.1Sequence record reported by the local genomic context database.
Genomic interval117 701-119 125 nt1 425 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span116 906-119 125 ntGCF_002550015::NZ_NMTZ01000013.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002550015::NZ_NMTZ01000013.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NMTZ01000013.1All displayed genes belong to this local TCS context.
Neighborhood span116 906-119 125 nt2 220 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
116 906 nt119 125 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CGS59_RS04875GCF_002550015#CGS59_RS04875
RROmpR
116 906-117 610 nt · Forward (+)
CGS59_RS04880GCF_002550015#CGS59_RS04880
HKClassicCurrent focus
117 701-119 125 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002550015#CGS59_RS04880The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1676815
Simplified PFAM architecture for HKOC_1676815
PFAM domain coverage: 229 / 474 aa (48.3%)
1 aa474 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[194-247] | HisKA[251-318] | HATPase_c[365-471]
- Domain count: 3
- Matched identifier: HKOC_1676815
- Positioned domains: HAMP 194-247 ; HisKA 251-318 ; HATPase_c 365-471
Cluster members and taxonomy
Representative gene: GCF_002550015#CGS59_RS04880
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_002550015
AssemblyASM255001v1 · Scaffoldhaploid
Genome composition2 915 240 bp · 56,5% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 49 · HK 23 · RR 25CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key