1 Response_reg#1
4-115 aa · 112 aa · 47.9% of protein
Raw token
Response_reg:4:7.11e-34:115:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CGS59_RS04875
Response regulator OmpR family
Faecalibacterium prausnitzii · GCF_002550015
ClassRRTypeOmpRLength234 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002550015#CGS59_RS04875Stable P2CS identifier used across views.
GenomeGCF_002550015Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage189 / 234 aa (80.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa234 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
156-232 aa · 77 aa · 32.9% of protein
Raw token
Trans_reg_C:156:2.56e-29:232:77:77- Raw architecture: Response_reg:4:7.11e-34:115:112:111#Trans_reg_C:156:2.56e-29:232:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002550015::NZ_NMTZ01000013.1::G00025
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span116906-119125Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCGS59_04860RefSeq proteinWP_097779117.1
Context group ID
GCF_002550015::NZ_NMTZ01000013.1::G00025Context members
CGS59_RS04875CGS59_RS04880
Partner locus tags
CGS59_RS04875CGS59_RS04880
Partner old locus tags
CGS59_04860CGS59_04865
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_097779117.1Primary protein accession used for annex mappings.
UniProt accessionA0A2A7AZL2Primary UniProt accession resolved in the annex database.
UniProt IDA0A2A7AZL2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCGS59_RS04875Primary locus identifier stored in the genes table.
Old locus tagCGS59_04860Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NMTZ01000013.1Sequence record reported by the local genomic context database.
Genomic interval116 906-117 610 nt705 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span116 906-119 125 ntGCF_002550015::NZ_NMTZ01000013.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002550015::NZ_NMTZ01000013.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NMTZ01000013.1All displayed genes belong to this local TCS context.
Neighborhood span116 906-119 125 nt2 220 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
116 906 nt119 125 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CGS59_RS04875GCF_002550015#CGS59_RS04875
RROmpRCurrent focus
116 906-117 610 nt · Forward (+)
CGS59_RS04880GCF_002550015#CGS59_RS04880
HKClassic
117 701-119 125 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002550015#CGS59_RS04875The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1053823
Simplified PFAM architecture for RROC_1053823
PFAM domain coverage: 188 / 234 aa (80.3%)
1 aa234 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-115] | Trans_reg_C[156-231]
- Domain count: 2
- Matched identifier: RROC_1053823
- Positioned domains: Response_reg 4-115 ; Response_reg 4-115 ; Trans_reg_C 156-231 ; Trans_reg_C 156-231
Cluster members and taxonomy
Representative gene: GCF_002550015#CGS59_RS04875
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_002550015
AssemblyASM255001v1 · Scaffoldhaploid
Genome composition2 915 240 bp · 56,5% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 49 · HK 23 · RR 25CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key