1 HisKA#1
357-423 aa · 67 aa · 9.1% of protein
Raw token
HisKA:357:0.0000000000000227:423:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CGS55_RS10575
Histidine kinase, Hybrid
Faecalibacterium prausnitzii · GCF_002549935
ClassHKTypeHybridLength734 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002549935#CGS55_RS10575Stable P2CS identifier used across views.
GenomeGCF_002549935Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length734 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage298 / 734 aa (40.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa734 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
470-587 aa · 118 aa · 16.1% of protein
Raw token
HATPase_c:470:5.19e-27:587:119:1093 Response_reg#3
610-722 aa · 113 aa · 15.4% of protein
Raw token
Response_reg:610:5.21e-29:722:113:111- Raw architecture: HisKA:357:0.0000000000000227:423:67:64#HATPase_c:470:5.19e-27:587:119:109#Response_reg:610:5.21e-29:722:113:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002549935::NZ_NMTV01000062.1::G00010
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span44900-47104Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCGS55_10550RefSeq proteinWP_097783507.1
Context group ID
GCF_002549935::NZ_NMTV01000062.1::G00010Context members
CGS55_RS10575
Partner locus tags
CGS55_RS10575
Partner old locus tags
CGS55_10550
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_097783507.1Primary protein accession used for annex mappings.
UniProt accessionA0A2A6ZYP5Primary UniProt accession resolved in the annex database.
UniProt IDA0A2A6ZYP5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCGS55_RS10575Primary locus identifier stored in the genes table.
Old locus tagCGS55_10550Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NMTV01000062.1Sequence record reported by the local genomic context database.
Genomic interval44 900-47 104 nt2 205 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span44 900-47 104 ntGCF_002549935::NZ_NMTV01000062.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002549935::NZ_NMTV01000062.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NMTV01000062.1All displayed genes belong to this local TCS context.
Neighborhood span44 900-47 104 nt2 205 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
44 900 nt47 104 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CGS55_RS10575GCF_002549935#CGS55_RS10575
HKHybridCurrent focus
44 900-47 104 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002549935#CGS55_RS10575The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0704350
Simplified PFAM architecture for HKOC_0704350
PFAM domain coverage: 298 / 734 aa (40.6%)
1 aa734 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[357-423] | HATPase_c[471-586] | Response_reg[610-724]
- Domain count: 3
- Matched identifier: HKOC_0704350
- Positioned domains: HisKA 357-423 ; HATPase_c 471-586 ; Response_reg 610-724
Cluster members and taxonomy
Representative gene: GCF_002549935#CGS55_RS10575
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_002549935
AssemblyASM254993v1 · Scaffoldhaploid
Genome composition3 422 520 bp · 55,0% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 64 · HK 30 · RR 33CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key