1 HisKA#1
85-150 aa · 66 aa · 21.6% of protein
Raw token
HisKA:85:0.0000000457:150:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CGS55_RS09670
Histidine kinase, Classic
Faecalibacterium prausnitzii · GCF_002549935
ClassHKTypeClassicLength305 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002549935#CGS55_RS09670Stable P2CS identifier used across views.
GenomeGCF_002549935Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length305 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 305 aa (55.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa305 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
202-304 aa · 103 aa · 33.8% of protein
Raw token
HATPase_c:202:6.38e-31:304:103:109- Raw architecture: HisKA:85:0.0000000457:150:66:64#HATPase_c:202:6.38e-31:304:103:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002549935::NZ_NMTV01000055.1::G00022
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3555-5170Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCGS55_09645RefSeq proteinWP_055186325.1
Context group ID
GCF_002549935::NZ_NMTV01000055.1::G00022Context members
CGS55_RS09670CGS55_RS09675
Partner locus tags
CGS55_RS09670CGS55_RS09675
Partner old locus tags
CGS55_09645CGS55_09650
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055186325.1Primary protein accession used for annex mappings.
UniProt accessionA0ABV1C668Primary UniProt accession resolved in the annex database.
UniProt IDA0ABV1C668_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCGS55_RS09670Primary locus identifier stored in the genes table.
Old locus tagCGS55_09645Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NMTV01000055.1Sequence record reported by the local genomic context database.
Genomic interval3 555-4 472 nt918 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 555-5 170 ntGCF_002549935::NZ_NMTV01000055.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002549935::NZ_NMTV01000055.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NMTV01000055.1All displayed genes belong to this local TCS context.
Neighborhood span3 555-5 170 nt1 616 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 555 nt5 170 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CGS55_RS09670GCF_002549935#CGS55_RS09670
HKClassicCurrent focus
3 555-4 472 nt · Reverse (-)
CGS55_RS09675GCF_002549935#CGS55_RS09675
RROmpR
4 478-5 170 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406255#AYV37_RS09350Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2882171
Simplified PFAM architecture for HKOC_2882171
PFAM domain coverage: 170 / 305 aa (55.7%)
1 aa305 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[85-148] | HATPase_c[199-304]
- Domain count: 2
- Matched identifier: HKOC_2882171
- Positioned domains: HisKA 85-148 ; HATPase_c 199-304
Cluster members and taxonomy
Representative gene: GCF_001406255#AYV37_RS09350
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_002549935
AssemblyASM254993v1 · Scaffoldhaploid
Genome composition3 422 520 bp · 55,0% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 64 · HK 30 · RR 33CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key