1 HAMP#1
182-251 aa · 70 aa · 13.8% of protein
Raw token
HAMP:182:4.64e-16:251:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CGS55_RS09040
Histidine kinase, Classic
Faecalibacterium prausnitzii · GCF_002549935
ClassHKTypeClassicLength509 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002549935#CGS55_RS09040Stable P2CS identifier used across views.
GenomeGCF_002549935Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length509 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage247 / 509 aa (48.5%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa509 aa
Domain-by-domain annotation3 items
2 HisKA#2
256-322 aa · 67 aa · 13.2% of protein
Raw token
HisKA:256:7.68e-19:322:67:643 HATPase_c#3
368-477 aa · 110 aa · 21.6% of protein
Raw token
HATPase_c:368:3.06e-31:477:110:109- Raw architecture: HAMP:182:4.64e-16:251:70:69#HisKA:256:7.68e-19:322:67:64#HATPase_c:368:3.06e-31:477:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002549935::NZ_NMTV01000053.1::G00031
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span42509-44736Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCGS55_09015RefSeq proteinWP_097783285.1
Context group ID
GCF_002549935::NZ_NMTV01000053.1::G00031Context members
CGS55_RS09035CGS55_RS09040
Partner locus tags
CGS55_RS09035CGS55_RS09040
Partner old locus tags
CGS55_09010CGS55_09015
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_097783285.1Primary protein accession used for annex mappings.
UniProt accessionA0A2A6ZZ54Primary UniProt accession resolved in the annex database.
UniProt IDA0A2A6ZZ54_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCGS55_RS09040Primary locus identifier stored in the genes table.
Old locus tagCGS55_09015Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NMTV01000053.1Sequence record reported by the local genomic context database.
Genomic interval43 207-44 736 nt1 530 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span42 509-44 736 ntGCF_002549935::NZ_NMTV01000053.1::G00031
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002549935::NZ_NMTV01000053.1::G00031Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NMTV01000053.1All displayed genes belong to this local TCS context.
Neighborhood span42 509-44 736 nt2 228 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
42 509 nt44 736 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CGS55_RS09035GCF_002549935#CGS55_RS09035
RROmpR
42 509-43 207 nt · Forward (+)
CGS55_RS09040GCF_002549935#CGS55_RS09040
HKClassicCurrent focus
43 207-44 736 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002549935#CGS55_RS09040The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1433329
Simplified PFAM architecture for HKOC_1433329
PFAM domain coverage: 229 / 509 aa (45.0%)
1 aa509 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[199-251] | HisKA[257-322] | HATPase_c[369-478]
- Domain count: 3
- Matched identifier: HKOC_1433329
- Positioned domains: HAMP 199-251 ; HisKA 257-322 ; HATPase_c 369-478
Cluster members and taxonomy
Representative gene: GCF_002549935#CGS55_RS09040
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_002549935
AssemblyASM254993v1 · Scaffoldhaploid
Genome composition3 422 520 bp · 55,0% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 64 · HK 30 · RR 33CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key