1 PAS_3#1
38-107 aa · 70 aa · 10.0% of protein
Raw token
PAS_3:38:0.00000000000548:107:74:89P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CGS55_RS06210
Response regulator, RpfG family
Faecalibacterium prausnitzii · GCF_002549935
ClassRRTypeRpfGLength701 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002549935#CGS55_RS06210Stable P2CS identifier used across views.
GenomeGCF_002549935Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
PAS_3GGDEFResponse_regHD
Protein length701 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage419 / 701 aa (59.8%)Merged over positioned domains only.
Domain description1 PAS_3,1 GGDEF,1 Response_reg,1 HDSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa701 aa
Domain-by-domain annotation4 items
2 GGDEF#2
190-334 aa · 145 aa · 20.7% of protein
Raw token
GGDEF:190:1.68e-37:334:157:1603 Response_reg#3
359-463 aa · 105 aa · 15.0% of protein
Raw token
Response_reg:359:1.67e-26:463:106:1114 HD#4
554-652 aa · 99 aa · 14.1% of protein
Raw token
HD:554:0.00000000000204:652:99:110- Raw architecture: PAS_3:38:0.00000000000548:107:74:89#GGDEF:190:1.68e-37:334:157:160#Response_reg:359:1.67e-26:463:106:111#HD:554:0.00000000000204:652:99:110
- Domain description: 1 PAS_3,1 GGDEF,1 Response_reg,1 HD
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002549935::NZ_NMTV01000037.1::G00002
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span63103-65208Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCGS55_06195RefSeq proteinWP_242963129.1
Context group ID
GCF_002549935::NZ_NMTV01000037.1::G00002Context members
CGS55_RS06210
Partner locus tags
CGS55_RS06210
Partner old locus tags
CGS55_06195
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_242963129.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCGS55_RS06210Primary locus identifier stored in the genes table.
Old locus tagCGS55_06195Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NMTV01000037.1Sequence record reported by the local genomic context database.
Genomic interval63 103-65 208 nt2 106 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span63 103-65 208 ntGCF_002549935::NZ_NMTV01000037.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002549935::NZ_NMTV01000037.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NMTV01000037.1All displayed genes belong to this local TCS context.
Neighborhood span63 103-65 208 nt2 106 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
63 103 nt65 208 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CGS55_RS06210GCF_002549935#CGS55_RS06210
RRRpfGCurrent focus
63 103-65 208 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002549935#CGS55_RS06210The current gene is the representative for this cluster.
PFAM architecturePAS_3 + GGDEF + Response_reg + HD_54 domains in the representative PFAM annotation.
PFAM architecture for RROC_0029625
Simplified PFAM architecture for RROC_0029625
PFAM domain coverage: 476 / 701 aa (67.9%)
1 aa701 aa
PAS_3GGDEFResponse_regHD_5
- Simplified architecture: PAS_3 + GGDEF + Response_reg + HD_5
- Raw architecture: PAS_3[39-120] | GGDEF[190-334] | Response_reg[359-465] | HD_5[531-672]
- Domain count: 4
- Matched identifier: RROC_0029625
- Positioned domains: PAS_3 39-120 ; PAS_3 39-120 ; GGDEF 190-334 ; GGDEF 190-334 ; Response_reg 359-465 ; Response_reg 359-465 ; HD_5 531-672 ; HD_5 531-672
Cluster members and taxonomy
Representative gene: GCF_002549935#CGS55_RS06210
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_002549935
AssemblyASM254993v1 · Scaffoldhaploid
Genome composition3 422 520 bp · 55,0% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 64 · HK 30 · RR 33CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key