1 HAMP#1
204-271 aa · 68 aa · 13.4% of protein
Raw token
HAMP:204:0.00000000000000232:271:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CGS46_RS04985
Histidine kinase, Classic
Faecalibacterium prausnitzii · GCF_002549755
ClassHKTypeClassicLength508 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002549755#CGS46_RS04985Stable P2CS identifier used across views.
GenomeGCF_002549755Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length508 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage241 / 508 aa (47.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 HisKA#2
275-342 aa · 68 aa · 13.4% of protein
Raw token
HisKA:275:4.54e-16:342:68:643 HATPase_c#3
388-492 aa · 105 aa · 20.7% of protein
Raw token
HATPase_c:388:1.66e-27:492:105:109- Raw architecture: HAMP:204:0.00000000000000232:271:68:69#HisKA:275:4.54e-16:342:68:64#HATPase_c:388:1.66e-27:492:105:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002549755::NZ_NMTQ01000020.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span354912-357143Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCGS46_04965RefSeq proteinWP_097776970.1
Context group ID
GCF_002549755::NZ_NMTQ01000020.1::G00010Context members
CGS46_RS04985CGS46_RS04990
Partner locus tags
CGS46_RS04985CGS46_RS04990
Partner old locus tags
CGS46_04965CGS46_04970
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_097776970.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCGS46_RS04985Primary locus identifier stored in the genes table.
Old locus tagCGS46_04965Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NMTQ01000020.1Sequence record reported by the local genomic context database.
Genomic interval354 912-356 438 nt1 527 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span354 912-357 143 ntGCF_002549755::NZ_NMTQ01000020.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002549755::NZ_NMTQ01000020.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NMTQ01000020.1All displayed genes belong to this local TCS context.
Neighborhood span354 912-357 143 nt2 232 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
354 912 nt357 143 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CGS46_RS04985GCF_002549755#CGS46_RS04985
HKClassicCurrent focus
354 912-356 438 nt · Reverse (-)
CGS46_RS04990GCF_002549755#CGS46_RS04990
RROmpR
356 457-357 143 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002549755#CGS46_RS04985The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1437345
Simplified PFAM architecture for HKOC_1437345
PFAM domain coverage: 221 / 508 aa (43.5%)
1 aa508 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[223-270] | HisKA[276-342] | HATPase_c[389-494]
- Domain count: 3
- Matched identifier: HKOC_1437345
- Positioned domains: HAMP 223-270 ; HisKA 276-342 ; HATPase_c 389-494
Cluster members and taxonomy
Representative gene: GCF_002549755#CGS46_RS04985
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_002549755
AssemblyASM254975v1 · Scaffoldhaploid
Genome composition3 043 493 bp · 55,5% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 38 · HK 18 · RR 19CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key