1 Response_reg#1
7-111 aa · 105 aa · 13.4% of protein
Raw token
Response_reg:7:8.9e-23:111:106:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CGS46_RS01790
Response regulator, RpfG family
Faecalibacterium prausnitzii · GCF_002549755
ClassRRTypeRpfGLength782 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002549755#CGS46_RS01790Stable P2CS identifier used across views.
GenomeGCF_002549755Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
Response_regHDGGDEF
Protein length782 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage354 / 782 aa (45.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 HD,1 GGDEFSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 HD#2
195-299 aa · 105 aa · 13.4% of protein
Raw token
HD:195:0.000000000000916:299:105:1103 GGDEF#3
639-782 aa · 144 aa · 18.4% of protein
Raw token
GGDEF:639:1.12e-37:782:160:160- Raw architecture: Response_reg:7:8.9e-23:111:106:111#HD:195:0.000000000000916:299:105:110#GGDEF:639:1.12e-37:782:160:160
- Domain description: 1 Response_reg,1 HD,1 GGDEF
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002549755::NZ_NMTQ01000011.1::G00012
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span142054-144402Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCGS46_01785RefSeq proteinWP_097776529.1
Context group ID
GCF_002549755::NZ_NMTQ01000011.1::G00012Context members
CGS46_RS01790
Partner locus tags
CGS46_RS01790
Partner old locus tags
CGS46_01785
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_097776529.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCGS46_RS01790Primary locus identifier stored in the genes table.
Old locus tagCGS46_01785Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NMTQ01000011.1Sequence record reported by the local genomic context database.
Genomic interval142 054-144 402 nt2 349 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span142 054-144 402 ntGCF_002549755::NZ_NMTQ01000011.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002549755::NZ_NMTQ01000011.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NMTQ01000011.1All displayed genes belong to this local TCS context.
Neighborhood span142 054-144 402 nt2 349 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
142 054 nt144 402 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CGS46_RS01790GCF_002549755#CGS46_RS01790
RRRpfGCurrent focus
142 054-144 402 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002549755#CGS46_RS01790The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HD_5 + GGDEF3 domains in the representative PFAM annotation.
PFAM architecture for RROC_0016903
Simplified PFAM architecture for RROC_0016903
PFAM domain coverage: 386 / 782 aa (49.4%)
1 aa782 aa
Response_regHD_5GGDEF
- Simplified architecture: Response_reg + HD_5 + GGDEF
- Raw architecture: Response_reg[7-117] | HD_5[188-318] | GGDEF[639-782]
- Domain count: 3
- Matched identifier: RROC_0016903
- Positioned domains: Response_reg 7-117 ; Response_reg 7-117 ; HD_5 188-318 ; HD_5 188-318 ; GGDEF 639-782 ; GGDEF 639-782
Cluster members and taxonomy
Representative gene: GCF_002549755#CGS46_RS01790
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_002549755
AssemblyASM254975v1 · Scaffoldhaploid
Genome composition3 043 493 bp · 55,5% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 38 · HK 18 · RR 19CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key