1 Response_reg#1
4-120 aa · 117 aa · 49.8% of protein
Raw token
Response_reg:4:3.77e-22:120:119:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BGU98_RS00200
Response regulator LytTR family
Clostridioides difficile · GCF_002304245
ClassRRTypeLytTRLength235 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002304245#BGU98_RS00200Stable P2CS identifier used across views.
GenomeGCF_002304245Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length235 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage202 / 235 aa (86.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 LytTR#2
141-225 aa · 85 aa · 36.2% of protein
Raw token
LytTR:141:1.35e-18:225:92:98- Raw architecture: Response_reg:4:3.77e-22:120:119:111#LytTR:141:1.35e-18:225:92:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002304245::NZ_MPFD01000040.1::G00001
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span165-870Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBGU98_00185RefSeq proteinWP_095968364.1
Context group ID
GCF_002304245::NZ_MPFD01000040.1::G00001Context members
BGU98_RS00200
Partner locus tags
BGU98_RS00200
Partner old locus tags
BGU98_00185
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_095968364.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBGU98_RS00200Primary locus identifier stored in the genes table.
Old locus tagBGU98_00185Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MPFD01000040.1Sequence record reported by the local genomic context database.
Genomic interval165-870 nt706 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span165-870 ntGCF_002304245::NZ_MPFD01000040.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002304245::NZ_MPFD01000040.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MPFD01000040.1All displayed genes belong to this local TCS context.
Neighborhood span165-870 nt706 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
165 nt870 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BGU98_RS00200GCF_002304245#BGU98_RS00200
RRLytTRCurrent focus
165-870 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002304245#BGU98_RS00200The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1022614
Simplified PFAM architecture for RROC_1022614
PFAM domain coverage: 200 / 235 aa (85.1%)
1 aa235 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-119] | LytTR[142-225]
- Domain count: 2
- Matched identifier: RROC_1022614
- Positioned domains: Response_reg 4-119 ; Response_reg 4-119 ; LytTR 142-225 ; LytTR 142-225
Cluster members and taxonomy
Representative gene: GCF_002304245#BGU98_RS00200
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002304245
AssemblyASM230424v1 · Contighaploid
Genome composition4 021 750 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 100 · HK 48 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key