1 HisKA#1
39-99 aa · 61 aa · 23.9% of protein
Raw token
HisKA:39:0.0000107:99:63:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BGU98_RS02075
Histidine kinase, Classic
Clostridioides difficile · GCF_002304245
ClassHKTypeClassicLength255 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002304245#BGU98_RS02075Stable P2CS identifier used across views.
GenomeGCF_002304245Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length255 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 255 aa (66.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
145-252 aa · 108 aa · 42.4% of protein
Raw token
HATPase_c:145:4.46e-26:252:108:109- Raw architecture: HisKA:39:0.0000107:99:63:64#HATPase_c:145:4.46e-26:252:108:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002304245::NZ_MPFD01000079.1::G00006
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span16650-17418Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBGU98_02035RefSeq proteinWP_095968370.1
Context group ID
GCF_002304245::NZ_MPFD01000079.1::G00006Context members
BGU98_RS02075
Partner locus tags
BGU98_RS02075
Partner old locus tags
BGU98_02035
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_095968370.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBGU98_RS02075Primary locus identifier stored in the genes table.
Old locus tagBGU98_02035Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MPFD01000079.1Sequence record reported by the local genomic context database.
Genomic interval16 650-17 418 nt769 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span16 650-17 418 ntGCF_002304245::NZ_MPFD01000079.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002304245::NZ_MPFD01000079.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MPFD01000079.1All displayed genes belong to this local TCS context.
Neighborhood span16 650-17 418 nt769 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
16 650 nt17 418 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BGU98_RS02075GCF_002304245#BGU98_RS02075
HKClassicCurrent focus
16 650-17 418 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000009205#CD630_RS08375Use this link to inspect the representative gene detail.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2849747
Simplified PFAM architecture for HKOC_2849747
PFAM domain coverage: 108 / 334 aa (32.3%)
1 aa334 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[224-331]
- Domain count: 1
- Matched identifier: HKOC_2849747
- Positioned domains: HATPase_c 224-331
Cluster members and taxonomy
Representative gene: GCF_000009205#CD630_RS08375
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_002304245
AssemblyASM230424v1 · Contighaploid
Genome composition4 021 750 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 100 · HK 48 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key