1 Response_reg#1
3-112 aa · 110 aa · 47.0% of protein
Raw token
Response_reg:3:7.06e-34:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BPS1E_RS01815
Response regulator OmpR family
Bifidobacterium pseudocatenulatum · GCF_002271255
ClassRRTypeOmpRLength234 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002271255#BPS1E_RS01815Stable P2CS identifier used across views.
GenomeGCF_002271255Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 234 aa (79.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa234 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
151-225 aa · 75 aa · 32.1% of protein
Raw token
Trans_reg_C:151:1.33e-27:225:75:77- Raw architecture: Response_reg:3:7.06e-34:112:111:111#Trans_reg_C:151:1.33e-27:225:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002271255::NZ_MNLB01000001.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span417742-421294Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBPS1E_0347RefSeq proteinWP_095279271.1
Context group ID
GCF_002271255::NZ_MNLB01000001.1::G00004Context members
BPS1E_RS01815BPS1E_RS01820
Partner locus tags
BPS1E_RS01815BPS1E_RS01820
Partner old locus tags
BPS1E_0347BPS1E_0348
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_095279271.1Primary protein accession used for annex mappings.
UniProt accessionA0A267WPD4Primary UniProt accession resolved in the annex database.
UniProt IDA0A267WPD4_BIFPSDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBPS1E_RS01815Primary locus identifier stored in the genes table.
Old locus tagBPS1E_0347Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MNLB01000001.1Sequence record reported by the local genomic context database.
Genomic interval417 742-418 446 nt705 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span417 742-421 294 ntGCF_002271255::NZ_MNLB01000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002271255::NZ_MNLB01000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MNLB01000001.1All displayed genes belong to this local TCS context.
Neighborhood span417 742-421 294 nt3 553 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
417 742 nt421 294 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BPS1E_RS01815GCF_002271255#BPS1E_RS01815
RROmpRCurrent focus
417 742-418 446 nt · Reverse (-)
BPS1E_RS01820GCF_002271255#BPS1E_RS01820
HKClassic
418 451-421 294 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002271255#BPS1E_RS01815The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1053553
Simplified PFAM architecture for RROC_1053553
PFAM domain coverage: 185 / 234 aa (79.1%)
1 aa234 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-112] | Trans_reg_C[151-225]
- Domain count: 2
- Matched identifier: RROC_1053553
- Positioned domains: Response_reg 3-112 ; Response_reg 3-112 ; Trans_reg_C 151-225 ; Trans_reg_C 151-225
Cluster members and taxonomy
Representative gene: GCF_002271255#BPS1E_RS01815
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 28 026 · GCF_002271255
AssemblyBpse1Ev1 · Contighaploid
Genome composition2 372 656 bp · 57,0% GCBifidobacterium pseudocatenulatum
Signal transduction countsGenes 25 · HK 11 · RR 12CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key