1 HisKA#1
184-249 aa · 66 aa · 14.3% of protein
Raw token
HisKA:184:0.00000000000336:249:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BPS1E_RS00905
Histidine kinase, Classic
Bifidobacterium pseudocatenulatum · GCF_002271255
ClassHKTypeClassicLength461 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002271255#BPS1E_RS00905Stable P2CS identifier used across views.
GenomeGCF_002271255Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length461 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage179 / 461 aa (38.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa461 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
312-424 aa · 113 aa · 24.5% of protein
Raw token
HATPase_c:312:5.11e-29:424:113:109- Raw architecture: HisKA:184:0.00000000000336:249:66:64#HATPase_c:312:5.11e-29:424:113:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002271255::NZ_MNLB01000001.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span184799-186969Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBPS1E_0172RefSeq proteinWP_095279212.1
Context group ID
GCF_002271255::NZ_MNLB01000001.1::G00003Context members
BPS1E_RS00900BPS1E_RS00905
Partner locus tags
BPS1E_RS00900BPS1E_RS00905
Partner old locus tags
BPS1E_0171BPS1E_0172
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_095279212.1Primary protein accession used for annex mappings.
UniProt accessionA0A267WNX3Primary UniProt accession resolved in the annex database.
UniProt IDA0A267WNX3_BIFPSDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBPS1E_RS00905Primary locus identifier stored in the genes table.
Old locus tagBPS1E_0172Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MNLB01000001.1Sequence record reported by the local genomic context database.
Genomic interval185 584-186 969 nt1 386 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span184 799-186 969 ntGCF_002271255::NZ_MNLB01000001.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002271255::NZ_MNLB01000001.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MNLB01000001.1All displayed genes belong to this local TCS context.
Neighborhood span184 799-186 969 nt2 171 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
184 799 nt186 969 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BPS1E_RS00900GCF_002271255#BPS1E_RS00900
RROmpR
184 799-185 503 nt · Reverse (-)
BPS1E_RS00905GCF_002271255#BPS1E_RS00905
HKClassicCurrent focus
185 584-186 969 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002271255#BPS1E_RS00905The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1822733
Simplified PFAM architecture for HKOC_1822733
PFAM domain coverage: 177 / 461 aa (38.4%)
1 aa461 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[184-249] | HATPase_c[313-423]
- Domain count: 2
- Matched identifier: HKOC_1822733
- Positioned domains: HisKA 184-249 ; HATPase_c 313-423
Cluster members and taxonomy
Representative gene: GCF_002271255#BPS1E_RS00905
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 28 026 · GCF_002271255
AssemblyBpse1Ev1 · Contighaploid
Genome composition2 372 656 bp · 57,0% GCBifidobacterium pseudocatenulatum
Signal transduction countsGenes 25 · HK 11 · RR 12CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key