1 HisKA#1
173-231 aa · 59 aa · 14.9% of protein
Raw token
HisKA:173:5.1e-16:231:60:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
B1H73_RS09200
Histidine kinase, Classic
Streptococcus agalactiae · GCF_002239385
ClassHKTypeClassicLength395 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002239385#B1H73_RS09200Stable P2CS identifier used across views.
GenomeGCF_002239385Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length395 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 395 aa (42.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa395 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
277-386 aa · 110 aa · 27.8% of protein
Raw token
HATPase_c:277:1.01e-16:386:111:109- Raw architecture: HisKA:173:5.1e-16:231:60:64#HATPase_c:277:1.01e-16:386:111:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002239385::NZ_MVFR01000040.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span132717-134578Genomic interval covered by the local TCS group.
Identifiers
Old locus tagB1H73_09165RefSeq proteinWP_000490535.1
Context group ID
GCF_002239385::NZ_MVFR01000040.1::G00008Context members
B1H73_RS09200B1H73_RS09205
Partner locus tags
B1H73_RS09200B1H73_RS09205
Partner old locus tags
B1H73_09165B1H73_09170
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000490535.1Primary protein accession used for annex mappings.
UniProt accessionA0AAV3JHU0Primary UniProt accession resolved in the annex database.
UniProt IDA0AAV3JHU0_STRAGDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagB1H73_RS09200Primary locus identifier stored in the genes table.
Old locus tagB1H73_09165Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MVFR01000040.1Sequence record reported by the local genomic context database.
Genomic interval132 717-133 904 nt1 188 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span132 717-134 578 ntGCF_002239385::NZ_MVFR01000040.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002239385::NZ_MVFR01000040.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MVFR01000040.1All displayed genes belong to this local TCS context.
Neighborhood span132 717-134 578 nt1 862 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
132 717 nt134 578 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
B1H73_RS09200GCF_002239385#B1H73_RS09200
HKClassicCurrent focus
132 717-133 904 nt · Reverse (-)
B1H73_RS09205GCF_002239385#B1H73_RS09205
RROmpR
133 904-134 578 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000007265#SAG_RS11530Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2487606
Simplified PFAM architecture for HKOC_2487606
PFAM domain coverage: 165 / 395 aa (41.8%)
1 aa395 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[172-231] | HATPase_c[278-382]
- Domain count: 2
- Matched identifier: HKOC_2487606
- Positioned domains: HisKA 172-231 ; HATPase_c 278-382
Cluster members and taxonomy
Representative gene: GCF_000007265#SAG_RS11530
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 311 · GCF_002239385
AssemblyASM223938v1 · Contighaploid
Genome composition2 143 030 bp · 35,5% GCStreptococcus agalactiae
Signal transduction countsGenes 42 · HK 20 · RR 22CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyStreptococcaceaeGenusStreptococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Streptococcaceae7Streptococcus
Related genes
Preview from the same derived genome key