1 HAMP#1
58-133 aa · 76 aa · 21.2% of protein
Raw token
HAMP:58:0.00000000155:133:76:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
B1H73_RS00695
Histidine kinase, Classic
Streptococcus agalactiae · GCF_002239385
ClassHKTypeClassicLength359 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002239385#B1H73_RS00695Stable P2CS identifier used across views.
GenomeGCF_002239385Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length359 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage252 / 359 aa (70.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa359 aa
Domain-by-domain annotation3 items
2 HisKA#2
139-205 aa · 67 aa · 18.7% of protein
Raw token
HisKA:139:0.000000000000185:205:67:643 HATPase_c#3
250-358 aa · 109 aa · 30.4% of protein
Raw token
HATPase_c:250:4.31e-27:358:109:109- Raw architecture: HAMP:58:0.00000000155:133:76:69#HisKA:139:0.000000000000185:205:67:64#HATPase_c:250:4.31e-27:358:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002239385::NZ_MVFR01000003.1::G00015
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span9716-11450Genomic interval covered by the local TCS group.
Identifiers
Old locus tagB1H73_00695RefSeq proteinWP_001878564.1
Context group ID
GCF_002239385::NZ_MVFR01000003.1::G00015Context members
B1H73_RS00690B1H73_RS00695
Partner locus tags
B1H73_RS00690B1H73_RS00695
Partner old locus tags
B1H73_00690B1H73_00695
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_001878564.1Primary protein accession used for annex mappings.
UniProt accessionA0AAV3JI28Primary UniProt accession resolved in the annex database.
UniProt IDA0AAV3JI28_STRAGDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagB1H73_RS00695Primary locus identifier stored in the genes table.
Old locus tagB1H73_00695Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MVFR01000003.1Sequence record reported by the local genomic context database.
Genomic interval10 371-11 450 nt1 080 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span9 716-11 450 ntGCF_002239385::NZ_MVFR01000003.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002239385::NZ_MVFR01000003.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MVFR01000003.1All displayed genes belong to this local TCS context.
Neighborhood span9 716-11 450 nt1 735 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
9 716 nt11 450 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
B1H73_RS00690GCF_002239385#B1H73_RS00690
RROmpR
9 716-10 387 nt · Forward (+)
B1H73_RS00695GCF_002239385#B1H73_RS00695
HKClassicCurrent focus
10 371-11 450 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000012705#SAK_RS00865Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2752982
Simplified PFAM architecture for HKOC_2752982
PFAM domain coverage: 174 / 359 aa (48.5%)
1 aa359 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[139-204] | HATPase_c[251-358]
- Domain count: 2
- Matched identifier: HKOC_2752982
- Positioned domains: HisKA 139-204 ; HATPase_c 251-358
Cluster members and taxonomy
Representative gene: GCF_000012705#SAK_RS00865
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 311 · GCF_002239385
AssemblyASM223938v1 · Contighaploid
Genome composition2 143 030 bp · 35,5% GCStreptococcus agalactiae
Signal transduction countsGenes 42 · HK 20 · RR 22CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyStreptococcaceaeGenusStreptococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Streptococcaceae7Streptococcus
Related genes
Preview from the same derived genome key