1 HisKA#1
173-231 aa · 59 aa · 14.9% of protein
Raw token
HisKA:173:5.1e-16:231:60:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SAG_RS11530
Histidine kinase, Classic
Streptococcus agalactiae 2603V/R · GCF_000007265
ClassHKTypeClassicLength395 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000007265#SAG_RS11530Stable P2CS identifier used across views.
GenomeGCF_000007265Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length395 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 395 aa (42.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa395 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
277-386 aa · 110 aa · 27.8% of protein
Raw token
HATPase_c:277:1.01e-16:386:111:109- Raw architecture: HisKA:173:5.1e-16:231:60:64#HATPase_c:277:1.01e-16:386:111:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000007265::NC_004116.1::G00014
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1783395-1785256Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSAG1791RefSeq proteinWP_000490535.1
Context group ID
GCF_000007265::NC_004116.1::G00014Context members
SAG_RS11530SAG_RS11535
Partner locus tags
SAG_RS11530SAG_RS11535
Partner old locus tags
SAG1791SAG1792
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000490535.1Primary protein accession used for annex mappings.
UniProt accessionA0AAV3JHU0Primary UniProt accession resolved in the annex database.
UniProt IDA0AAV3JHU0_STRAGDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSAG_RS11530Primary locus identifier stored in the genes table.
Old locus tagSAG1791Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_004116.1Sequence record reported by the local genomic context database.
Genomic interval1 783 395-1 784 582 nt1 188 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 783 395-1 785 256 ntGCF_000007265::NC_004116.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000007265::NC_004116.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_004116.1All displayed genes belong to this local TCS context.
Neighborhood span1 783 395-1 785 256 nt1 862 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 783 395 nt1 785 256 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
SAG_RS11530GCF_000007265#SAG_RS11530
HKClassicCurrent focus
1 783 395-1 784 582 nt · Reverse (-)
SAG_RS11535GCF_000007265#SAG_RS11535
RROmpR
1 784 582-1 785 256 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000007265#SAG_RS11530The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2487606
Simplified PFAM architecture for HKOC_2487606
PFAM domain coverage: 165 / 395 aa (41.8%)
1 aa395 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[172-231] | HATPase_c[278-382]
- Domain count: 2
- Matched identifier: HKOC_2487606
- Positioned domains: HisKA 172-231 ; HATPase_c 278-382
Cluster members and taxonomy
Representative gene: GCF_000007265#SAG_RS11530
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 208 435 · GCF_000007265
AssemblyASM726v1 · Complete Genomehaploid
Genome composition2 160 267 bp · 35,5% GCStreptococcus agalactiae 2603V/R
Signal transduction countsGenes 38 · HK 18 · RR 20CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyStreptococcaceaeGenusStreptococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Streptococcaceae7Streptococcus
Related genes
Preview from the same derived genome key