1 HisKA#1
73-138 aa · 66 aa · 22.6% of protein
Raw token
HisKA:73:0.0000000000000138:138:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
B1H73_RS06740
Histidine kinase, Classic
Streptococcus agalactiae · GCF_002239385
ClassHKTypeClassicLength292 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002239385#B1H73_RS06740Stable P2CS identifier used across views.
GenomeGCF_002239385Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length292 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage166 / 292 aa (56.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa292 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
188-287 aa · 100 aa · 34.2% of protein
Raw token
HATPase_c:188:0.00000000000000333:287:104:109- Raw architecture: HisKA:73:0.0000000000000138:138:66:64#HATPase_c:188:0.00000000000000333:287:104:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002239385::NZ_MVFR01000033.1::G00007
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span48619-49497Genomic interval covered by the local TCS group.
Identifiers
Old locus tagB1H73_06725RefSeq proteinWP_032684685.1
Context group ID
GCF_002239385::NZ_MVFR01000033.1::G00007Context members
B1H73_RS06740
Partner locus tags
B1H73_RS06740
Partner old locus tags
B1H73_06725
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_032684685.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagB1H73_RS06740Primary locus identifier stored in the genes table.
Old locus tagB1H73_06725Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MVFR01000033.1Sequence record reported by the local genomic context database.
Genomic interval48 619-49 497 nt879 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span48 619-49 497 ntGCF_002239385::NZ_MVFR01000033.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002239385::NZ_MVFR01000033.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MVFR01000033.1All displayed genes belong to this local TCS context.
Neighborhood span48 619-49 497 nt879 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
48 619 nt49 497 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
B1H73_RS06740GCF_002239385#B1H73_RS06740
HKClassicCurrent focus
48 619-49 497 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000730135#EK13BL_RS04360Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2893981
Simplified PFAM architecture for HKOC_2893981
PFAM domain coverage: 163 / 292 aa (55.8%)
1 aa292 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[74-137] | HATPase_c[187-285]
- Domain count: 2
- Matched identifier: HKOC_2893981
- Positioned domains: HisKA 74-137 ; HATPase_c 187-285
Cluster members and taxonomy
Representative gene: GCF_000730135#EK13BL_RS04360
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 311 · GCF_002239385
AssemblyASM223938v1 · Contighaploid
Genome composition2 143 030 bp · 35,5% GCStreptococcus agalactiae
Signal transduction countsGenes 42 · HK 20 · RR 22CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyStreptococcaceaeGenusStreptococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Streptococcaceae7Streptococcus
Related genes
Preview from the same derived genome key