1 HisKA#1
73-138 aa · 66 aa · 22.6% of protein
Raw token
HisKA:73:0.0000000000000138:138:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EK13BL_RS04360
Histidine kinase, Classic
Bifidobacterium longum subsp. longum EK13 · GCF_000730135
ClassHKTypeClassicLength292 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000730135#EK13BL_RS04360Stable P2CS identifier used across views.
GenomeGCF_000730135Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length292 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage166 / 292 aa (56.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa292 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
188-287 aa · 100 aa · 34.2% of protein
Raw token
HATPase_c:188:0.00000000000000333:287:104:109- Raw architecture: HisKA:73:0.0000000000000138:138:66:64#HATPase_c:188:0.00000000000000333:287:104:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000730135::NZ_JNWD01000023.1::G00009
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span549305-550183Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEK13BL_05180RefSeq proteinWP_032684685.1
Context group ID
GCF_000730135::NZ_JNWD01000023.1::G00009Context members
EK13BL_RS04360
Partner locus tags
EK13BL_RS04360
Partner old locus tags
EK13BL_05180
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_032684685.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEK13BL_RS04360Primary locus identifier stored in the genes table.
Old locus tagEK13BL_05180Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JNWD01000023.1Sequence record reported by the local genomic context database.
Genomic interval549 305-550 183 nt879 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span549 305-550 183 ntGCF_000730135::NZ_JNWD01000023.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000730135::NZ_JNWD01000023.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JNWD01000023.1All displayed genes belong to this local TCS context.
Neighborhood span549 305-550 183 nt879 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
549 305 nt550 183 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
EK13BL_RS04360GCF_000730135#EK13BL_RS04360
HKClassicCurrent focus
549 305-550 183 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000730135#EK13BL_RS04360The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2893981
Simplified PFAM architecture for HKOC_2893981
PFAM domain coverage: 163 / 292 aa (55.8%)
1 aa292 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[74-137] | HATPase_c[187-285]
- Domain count: 2
- Matched identifier: HKOC_2893981
- Positioned domains: HisKA 74-137 ; HATPase_c 187-285
Cluster members and taxonomy
Representative gene: GCF_000730135#EK13BL_RS04360
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 457 186 · GCF_000730135
AssemblyASM73013v1 · Scaffoldhaploid
Genome composition2 474 529 bp · 60,0% GCBifidobacterium longum subsp. longum EK13
Signal transduction countsGenes 22 · HK 11 · RR 11CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key