1 Response_reg#1
6-115 aa · 110 aa · 46.4% of protein
Raw token
Response_reg:6:5.96e-36:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BK732_RS10715
Response regulator OmpR family
Bacillus thuringiensis serovar navarrensis · GCF_002146725
ClassRRTypeOmpRLength237 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002146725#BK732_RS10715Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length237 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 237 aa (78.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
154-230 aa · 77 aa · 32.5% of protein
Raw token
Trans_reg_C:154:9.68e-36:230:77:77- Raw architecture: Response_reg:6:5.96e-36:115:111:111#Trans_reg_C:154:9.68e-36:230:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002146725::NZ_NFDG01000076.1::G00030
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span4019-5735Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBK732_10575RefSeq proteinWP_088031704.1
Context group ID
GCF_002146725::NZ_NFDG01000076.1::G00030Context members
BK732_RS10710BK732_RS10715
Partner locus tags
BK732_RS10710BK732_RS10715
Partner old locus tags
BK732_10570BK732_10575
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_088031704.1Primary protein accession used for annex mappings.
UniProt accessionA0A653UYZ0Primary UniProt accession resolved in the annex database.
UniProt IDA0A653UYZ0_BACMYDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBK732_RS10715Primary locus identifier stored in the genes table.
Old locus tagBK732_10575Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NFDG01000076.1Sequence record reported by the local genomic context database.
Genomic interval5 022-5 735 nt714 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span4 019-5 735 ntGCF_002146725::NZ_NFDG01000076.1::G00030
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002146725::NZ_NFDG01000076.1::G00030Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NFDG01000076.1All displayed genes belong to this local TCS context.
Neighborhood span4 019-5 735 nt1 717 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 019 nt5 735 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BK732_RS10710GCF_002146725#BK732_RS10710
HKClassic
4 019-5 032 nt · Reverse (-)
BK732_RS10715GCF_002146725#BK732_RS10715
RROmpRCurrent focus
5 022-5 735 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002146725#BK732_RS10715The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0966406
Simplified PFAM architecture for RROC_0966406
PFAM domain coverage: 187 / 237 aa (78.9%)
1 aa237 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[154-230]
- Domain count: 2
- Matched identifier: RROC_0966406
- Positioned domains: Response_reg 6-115 ; Response_reg 6-115 ; Trans_reg_C 154-230 ; Trans_reg_C 154-230
Cluster members and taxonomy
Representative gene: GCF_002146725#BK732_RS10715
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 339 658 · GCF_002146725
AssemblyASM214672v1 · Contighaploid
Genome composition6 187 874 bp · 35,0% GCBacillus thuringiensis serovar navarrensis
Signal transduction countsGenes 125 · HK 68 · RR 57CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key