1 Response_reg#1
4-113 aa · 110 aa · 47.0% of protein
Raw token
Response_reg:4:5.99e-23:113:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BK732_RS01720
Response regulator OmpR family
Bacillus thuringiensis serovar navarrensis · GCF_002146725
ClassRRTypeOmpRLength234 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002146725#BK732_RS01720Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 234 aa (79.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
150-224 aa · 75 aa · 32.1% of protein
Raw token
Trans_reg_C:150:2.21e-20:224:77:77- Raw architecture: Response_reg:4:5.99e-23:113:114:111#Trans_reg_C:150:2.21e-20:224:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002146725::NZ_NFDG01000017.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span36107-37797Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBK732_01695RefSeq proteinWP_060749911.1
Context group ID
GCF_002146725::NZ_NFDG01000017.1::G00002Context members
BK732_RS01720BK732_RS01725
Partner locus tags
BK732_RS01720BK732_RS01725
Partner old locus tags
BK732_01695BK732_01700
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_060749911.1Primary protein accession used for annex mappings.
UniProt accessionA0A120EID6Primary UniProt accession resolved in the annex database.
UniProt IDA0A120EID6_BACMYDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBK732_RS01720Primary locus identifier stored in the genes table.
Old locus tagBK732_01695Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NFDG01000017.1Sequence record reported by the local genomic context database.
Genomic interval36 107-36 811 nt705 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span36 107-37 797 ntGCF_002146725::NZ_NFDG01000017.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002146725::NZ_NFDG01000017.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NFDG01000017.1All displayed genes belong to this local TCS context.
Neighborhood span36 107-37 797 nt1 691 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
36 107 nt37 797 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BK732_RS01720GCF_002146725#BK732_RS01720
RROmpRCurrent focus
36 107-36 811 nt · Forward (+)
BK732_RS01725GCF_002146725#BK732_RS01725
HKClassic
36 811-37 797 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001541985#AWW70_RS09825Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1051654
Simplified PFAM architecture for RROC_1051654
PFAM domain coverage: 183 / 234 aa (78.2%)
1 aa234 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[151-224]
- Domain count: 2
- Matched identifier: RROC_1051654
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 151-224 ; Trans_reg_C 151-224
Cluster members and taxonomy
Representative gene: GCF_001541985#AWW70_RS09825
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 339 658 · GCF_002146725
AssemblyASM214672v1 · Contighaploid
Genome composition6 187 874 bp · 35,0% GCBacillus thuringiensis serovar navarrensis
Signal transduction countsGenes 125 · HK 68 · RR 57CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key