1 Response_reg#1
6-114 aa · 109 aa · 46.8% of protein
Raw token
Response_reg:6:1.71e-34:114:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BAQ49_RS05995
Response regulator OmpR family
Bacillus proteolyticus · GCF_001884065
ClassRRTypeOmpRLength233 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001884065#BAQ49_RS05995Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length233 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 233 aa (80.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa233 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-230 aa · 78 aa · 33.5% of protein
Raw token
Trans_reg_C:153:1.69e-33:230:78:77- Raw architecture: Response_reg:6:1.71e-34:114:110:111#Trans_reg_C:153:1.69e-33:230:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001884065::NZ_MACH01000053.1::G00027
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span45623-48076Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBAQ49_24485RefSeq proteinWP_071744587.1
Context group ID
GCF_001884065::NZ_MACH01000053.1::G00027Context members
BAQ49_RS05990BAQ49_RS05995
Partner locus tags
BAQ49_RS05990BAQ49_RS05995
Partner old locus tags
BAQ49_24480BAQ49_24485
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_071744587.1Primary protein accession used for annex mappings.
UniProt accessionA0AA44R8T3Primary UniProt accession resolved in the annex database.
UniProt IDA0AA44R8T3_9BACIDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBAQ49_RS05995Primary locus identifier stored in the genes table.
Old locus tagBAQ49_24485Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MACH01000053.1Sequence record reported by the local genomic context database.
Genomic interval47 375-48 076 nt702 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span45 623-48 076 ntGCF_001884065::NZ_MACH01000053.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001884065::NZ_MACH01000053.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MACH01000053.1All displayed genes belong to this local TCS context.
Neighborhood span45 623-48 076 nt2 454 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
45 623 nt48 076 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BAQ49_RS05990GCF_001884065#BAQ49_RS05990
HKClassic
45 623-47 365 nt · Reverse (-)
BAQ49_RS05995GCF_001884065#BAQ49_RS05995
RROmpRCurrent focus
47 375-48 076 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001884065#BAQ49_RS05995The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1086941
Simplified PFAM architecture for RROC_1086941
PFAM domain coverage: 187 / 233 aa (80.3%)
1 aa233 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[154-230]
- Domain count: 2
- Matched identifier: RROC_1086941
- Positioned domains: Response_reg 6-115 ; Response_reg 6-115 ; Trans_reg_C 154-230 ; Trans_reg_C 154-230
Cluster members and taxonomy
Representative gene: GCF_001884065#BAQ49_RS05995
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 026 192 · GCF_001884065
AssemblyASM188406v1 · Contigreference genome · haploid
Genome composition5 859 329 bp · 35,0% GCBacillus proteolyticus
Signal transduction countsGenes 118 · HK 65 · RR 53CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key