1 HAMP#1
161-229 aa · 69 aa · 15.1% of protein
Raw token
HAMP:161:6.9e-16:229:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BAQ49_RS00470
Histidine kinase, Classic
Bacillus proteolyticus · GCF_001884065
ClassHKTypeClassicLength456 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001884065#BAQ49_RS00470Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length456 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage245 / 456 aa (53.7%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa456 aa
Domain-by-domain annotation3 items
2 HisKA#2
234-298 aa · 65 aa · 14.3% of protein
Raw token
HisKA:234:0.00000000000000874:298:65:643 HATPase_c#3
346-456 aa · 111 aa · 24.3% of protein
Raw token
HATPase_c:346:2.58e-37:456:111:109- Raw architecture: HAMP:161:6.9e-16:229:69:69#HisKA:234:0.00000000000000874:298:65:64#HATPase_c:346:2.58e-37:456:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001884065::NZ_MACH01000002.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span76451-78510Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBAQ49_04335RefSeq proteinWP_071743767.1
Context group ID
GCF_001884065::NZ_MACH01000002.1::G00001Context members
BAQ49_RS00465BAQ49_RS00470
Partner locus tags
BAQ49_RS00465BAQ49_RS00470
Partner old locus tags
BAQ49_04330BAQ49_04335
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_071743767.1Primary protein accession used for annex mappings.
UniProt accessionA0AA44L087Primary UniProt accession resolved in the annex database.
UniProt IDA0AA44L087_9BACIDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBAQ49_RS00470Primary locus identifier stored in the genes table.
Old locus tagBAQ49_04335Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_MACH01000002.1Sequence record reported by the local genomic context database.
Genomic interval77 140-78 510 nt1 371 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span76 451-78 510 ntGCF_001884065::NZ_MACH01000002.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001884065::NZ_MACH01000002.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_MACH01000002.1All displayed genes belong to this local TCS context.
Neighborhood span76 451-78 510 nt2 060 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
76 451 nt78 510 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BAQ49_RS00465GCF_001884065#BAQ49_RS00465
RROmpR
76 451-77 128 nt · Forward (+)
BAQ49_RS00470GCF_001884065#BAQ49_RS00470
HKClassicCurrent focus
77 140-78 510 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001884065#BAQ49_RS00470The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1889621
Simplified PFAM architecture for HKOC_1889621
PFAM domain coverage: 226 / 456 aa (49.6%)
1 aa456 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[178-229] | HisKA[235-298] | HATPase_c[346-455]
- Domain count: 3
- Matched identifier: HKOC_1889621
- Positioned domains: HAMP 178-229 ; HisKA 235-298 ; HATPase_c 346-455
Cluster members and taxonomy
Representative gene: GCF_001884065#BAQ49_RS00470
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 026 192 · GCF_001884065
AssemblyASM188406v1 · Contigreference genome · haploid
Genome composition5 859 329 bp · 35,0% GCBacillus proteolyticus
Signal transduction countsGenes 118 · HK 65 · RR 53CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key