1 Response_reg#1
6-111 aa · 106 aa · 47.1% of protein
Raw token
Response_reg:6:3.25e-31:111:107:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
A9490_RS25450
Response regulator OmpR family
Bacillus thuringiensis · GCF_001883945
ClassRRTypeOmpRLength225 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001883945#A9490_RS25450Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length225 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 225 aa (80.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa225 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-222 aa · 76 aa · 33.8% of protein
Raw token
Trans_reg_C:147:1.62e-29:222:77:77- Raw architecture: Response_reg:6:3.25e-31:111:107:111#Trans_reg_C:147:1.62e-29:222:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001883945::NZ_LZRC01000120.1::G00056
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span36030-38085Genomic interval covered by the local TCS group.
Identifiers
Old locus tagA9490_15610RefSeq proteinWP_000781973.1
Context group ID
GCF_001883945::NZ_LZRC01000120.1::G00056Context members
A9490_RS25450A9490_RS25455
Partner locus tags
A9490_RS25450A9490_RS25455
Partner old locus tags
A9490_15610A9490_15615
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000781973.1Primary protein accession used for annex mappings.
UniProt accessionA0AAN4KN64Primary UniProt accession resolved in the annex database.
UniProt IDA0AAN4KN64_BACTUDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagA9490_RS25450Primary locus identifier stored in the genes table.
Old locus tagA9490_15610Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LZRC01000120.1Sequence record reported by the local genomic context database.
Genomic interval36 030-36 707 nt678 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span36 030-38 085 ntGCF_001883945::NZ_LZRC01000120.1::G00056
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001883945::NZ_LZRC01000120.1::G00056Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LZRC01000120.1All displayed genes belong to this local TCS context.
Neighborhood span36 030-38 085 nt2 056 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
36 030 nt38 085 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
A9490_RS25450GCF_001883945#A9490_RS25450
RROmpRCurrent focus
36 030-36 707 nt · Forward (+)
A9490_RS25455GCF_001883945#A9490_RS25455
HKClassic
36 709-38 085 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000161515#BTHUR0003_RS15185Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1463391
Simplified PFAM architecture for RROC_1463391
PFAM domain coverage: 182 / 225 aa (80.9%)
1 aa225 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-111] | Trans_reg_C[147-222]
- Domain count: 2
- Matched identifier: RROC_1463391
- Positioned domains: Response_reg 6-111 ; Response_reg 6-111 ; Trans_reg_C 147-222 ; Trans_reg_C 147-222
Cluster members and taxonomy
Representative gene: GCF_000161515#BTHUR0003_RS15185
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 428 · GCF_001883945
AssemblyASM188394v1 · Contighaploid
Genome composition5 773 294 bp · 35,0% GCBacillus thuringiensis
Signal transduction countsGenes 117 · HK 63 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key