1 Response_reg#1
5-113 aa · 109 aa · 47.4% of protein
Raw token
Response_reg:5:8.29e-23:113:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
A9490_RS00325
Response regulator OmpR family
Bacillus thuringiensis · GCF_001883945
ClassRRTypeOmpRLength230 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001883945#A9490_RS00325Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length230 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 230 aa (80.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa230 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
151-225 aa · 75 aa · 32.6% of protein
Raw token
Trans_reg_C:151:3.39e-25:225:76:77- Raw architecture: Response_reg:5:8.29e-23:113:110:111#Trans_reg_C:151:3.39e-25:225:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001883945::NZ_LZRC01000004.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span35429-37113Genomic interval covered by the local TCS group.
Identifiers
Old locus tagA9490_20180RefSeq proteinWP_071680125.1
Context group ID
GCF_001883945::NZ_LZRC01000004.1::G00001Context members
A9490_RS00325A9490_RS00330
Partner locus tags
A9490_RS00325A9490_RS00330
Partner old locus tags
A9490_20180A9490_20185
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_071680125.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagA9490_RS00325Primary locus identifier stored in the genes table.
Old locus tagA9490_20180Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LZRC01000004.1Sequence record reported by the local genomic context database.
Genomic interval35 429-36 121 nt693 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span35 429-37 113 ntGCF_001883945::NZ_LZRC01000004.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001883945::NZ_LZRC01000004.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LZRC01000004.1All displayed genes belong to this local TCS context.
Neighborhood span35 429-37 113 nt1 685 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
35 429 nt37 113 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
A9490_RS00325GCF_001883945#A9490_RS00325
RROmpRCurrent focus
35 429-36 121 nt · Forward (+)
A9490_RS00330GCF_001883945#A9490_RS00330
HKClassic
36 118-37 113 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001883945#A9490_RS00325The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1207094
Simplified PFAM architecture for RROC_1207094
PFAM domain coverage: 182 / 230 aa (79.1%)
1 aa230 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-112] | Trans_reg_C[152-225]
- Domain count: 2
- Matched identifier: RROC_1207094
- Positioned domains: Response_reg 5-112 ; Response_reg 5-112 ; Trans_reg_C 152-225 ; Trans_reg_C 152-225
Cluster members and taxonomy
Representative gene: GCF_001883945#A9490_RS00325
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 428 · GCF_001883945
AssemblyASM188394v1 · Contighaploid
Genome composition5 773 294 bp · 35,0% GCBacillus thuringiensis
Signal transduction countsGenes 117 · HK 63 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key