1 HisKA#1
113-171 aa · 59 aa · 17.8% of protein
Raw token
HisKA:113:0.00000824:171:61:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
A9490_RS00330
Histidine kinase, Classic
Bacillus thuringiensis · GCF_001883945
ClassHKTypeClassicLength331 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001883945#A9490_RS00330Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length331 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage161 / 331 aa (48.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa331 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
221-322 aa · 102 aa · 30.8% of protein
Raw token
HATPase_c:221:0.000000000000019:322:106:109- Raw architecture: HisKA:113:0.00000824:171:61:64#HATPase_c:221:0.000000000000019:322:106:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001883945::NZ_LZRC01000004.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span35429-37113Genomic interval covered by the local TCS group.
Identifiers
Old locus tagA9490_20185RefSeq proteinWP_071729438.1
Context group ID
GCF_001883945::NZ_LZRC01000004.1::G00001Context members
A9490_RS00325A9490_RS00330
Partner locus tags
A9490_RS00325A9490_RS00330
Partner old locus tags
A9490_20180A9490_20185
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_071729438.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagA9490_RS00330Primary locus identifier stored in the genes table.
Old locus tagA9490_20185Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LZRC01000004.1Sequence record reported by the local genomic context database.
Genomic interval36 118-37 113 nt996 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span35 429-37 113 ntGCF_001883945::NZ_LZRC01000004.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001883945::NZ_LZRC01000004.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LZRC01000004.1All displayed genes belong to this local TCS context.
Neighborhood span35 429-37 113 nt1 685 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
35 429 nt37 113 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
A9490_RS00325GCF_001883945#A9490_RS00325
RROmpR
35 429-36 121 nt · Forward (+)
A9490_RS00330GCF_001883945#A9490_RS00330
HKClassicCurrent focus
36 118-37 113 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001883945#A9490_RS00330The current gene is the representative for this cluster.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2855366
Simplified PFAM architecture for HKOC_2855366
PFAM domain coverage: 101 / 331 aa (30.5%)
1 aa331 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[221-321]
- Domain count: 1
- Matched identifier: HKOC_2855366
- Positioned domains: HATPase_c 221-321
Cluster members and taxonomy
Representative gene: GCF_001883945#A9490_RS00330
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 428 · GCF_001883945
AssemblyASM188394v1 · Contighaploid
Genome composition5 773 294 bp · 35,0% GCBacillus thuringiensis
Signal transduction countsGenes 117 · HK 63 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key