1 HisKA_3#1
573-639 aa · 67 aa · 8.7% of protein
Raw token
HisKA_3:573:0.000000000817:639:68:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
A9490_RS19810
Histidine kinase, Classic
Bacillus thuringiensis · GCF_001883945
ClassHKTypeClassicLength772 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001883945#A9490_RS19810Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length772 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage160 / 772 aa (20.7%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa772 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
678-770 aa · 93 aa · 12.0% of protein
Raw token
HATPase_c:678:0.00000000000000565:770:106:109- Raw architecture: HisKA_3:573:0.000000000817:639:68:68#HATPase_c:678:0.00000000000000565:770:106:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001883945::NZ_LZRC01000084.1::G00039
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span24854-27817Genomic interval covered by the local TCS group.
Identifiers
Old locus tagA9490_10270RefSeq proteinWP_071731509.1
Context group ID
GCF_001883945::NZ_LZRC01000084.1::G00039Context members
A9490_RS19805A9490_RS19810
Partner locus tags
A9490_RS19805A9490_RS19810
Partner old locus tags
A9490_10265A9490_10270
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_071731509.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagA9490_RS19810Primary locus identifier stored in the genes table.
Old locus tagA9490_10270Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LZRC01000084.1Sequence record reported by the local genomic context database.
Genomic interval25 499-27 817 nt2 319 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span24 854-27 817 ntGCF_001883945::NZ_LZRC01000084.1::G00039
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001883945::NZ_LZRC01000084.1::G00039Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LZRC01000084.1All displayed genes belong to this local TCS context.
Neighborhood span24 854-27 817 nt2 964 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
24 854 nt27 817 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
A9490_RS19805GCF_001883945#A9490_RS19805
RRNarL
24 854-25 495 nt · Reverse (-)
A9490_RS19810GCF_001883945#A9490_RS19810
HKClassicCurrent focus
25 499-27 817 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001883945#A9490_RS19810The current gene is the representative for this cluster.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0614198
Simplified PFAM architecture for HKOC_0614198
PFAM domain coverage: 156 / 772 aa (20.2%)
1 aa772 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[573-638] | HATPase_c[681-770]
- Domain count: 2
- Matched identifier: HKOC_0614198
- Positioned domains: HisKA_3 573-638 ; HATPase_c 681-770
Cluster members and taxonomy
Representative gene: GCF_001883945#A9490_RS19810
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 428 · GCF_001883945
AssemblyASM188394v1 · Contighaploid
Genome composition5 773 294 bp · 35,0% GCBacillus thuringiensis
Signal transduction countsGenes 117 · HK 63 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key