1 Response_reg#1
6-116 aa · 111 aa · 52.1% of protein
Raw token
Response_reg:6:1.5e-37:116:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
A9490_RS06645
Response regulator NarL family
Bacillus thuringiensis · GCF_001883945
ClassRRTypeNarLLength213 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001883945#A9490_RS06645Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length213 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage166 / 213 aa (77.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa213 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
151-205 aa · 55 aa · 25.8% of protein
Raw token
HTH_LUXR:151:2.58e-24:205:55:58- Raw architecture: Response_reg:6:1.5e-37:116:111:111#HTH_LUXR:151:2.58e-24:205:55:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001883945::NZ_LZRC01000022.1::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span66921-68674Genomic interval covered by the local TCS group.
Identifiers
Old locus tagA9490_26295RefSeq proteinWP_071730106.1
Context group ID
GCF_001883945::NZ_LZRC01000022.1::G00009Context members
A9490_RS06640A9490_RS06645
Partner locus tags
A9490_RS06640A9490_RS06645
Partner old locus tags
A9490_26290A9490_26295
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_071730106.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagA9490_RS06645Primary locus identifier stored in the genes table.
Old locus tagA9490_26295Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LZRC01000022.1Sequence record reported by the local genomic context database.
Genomic interval68 033-68 674 nt642 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span66 921-68 674 ntGCF_001883945::NZ_LZRC01000022.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001883945::NZ_LZRC01000022.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LZRC01000022.1All displayed genes belong to this local TCS context.
Neighborhood span66 921-68 674 nt1 754 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
66 921 nt68 674 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
A9490_RS06640GCF_001883945#A9490_RS06640
HKClassic
66 921-68 018 nt · Forward (+)
A9490_RS06645GCF_001883945#A9490_RS06645
RRNarLCurrent focus
68 033-68 674 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001883945#A9490_RS06645The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1965798
Simplified PFAM architecture for RROC_1965798
PFAM domain coverage: 167 / 213 aa (78.4%)
1 aa213 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[6-116] | GerE[150-205]
- Domain count: 2
- Matched identifier: RROC_1965798
- Positioned domains: Response_reg 6-116 ; Response_reg 6-116 ; GerE 150-205 ; GerE 150-205
Cluster members and taxonomy
Representative gene: GCF_001883945#A9490_RS06645
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 428 · GCF_001883945
AssemblyASM188394v1 · Contighaploid
Genome composition5 773 294 bp · 35,0% GCBacillus thuringiensis
Signal transduction countsGenes 117 · HK 63 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key