1 Response_reg#1
6-116 aa · 111 aa · 48.1% of protein
Raw token
Response_reg:6:1.05e-34:116:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BW28_RS01730
Response regulator OmpR family
Clostridioides difficile · GCF_001757605
ClassRRTypeOmpRLength231 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001757605#BW28_RS01730Stable P2CS identifier used across views.
GenomeGCF_001757605Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length231 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 231 aa (81.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa231 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
149-224 aa · 76 aa · 32.9% of protein
Raw token
Trans_reg_C:149:3.92e-22:224:76:77- Raw architecture: Response_reg:6:1.05e-34:116:112:111#Trans_reg_C:149:3.92e-22:224:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001757605::NZ_JFOF01000010.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span12826-14879Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBW28_00080RefSeq proteinWP_070112163.1
Context group ID
GCF_001757605::NZ_JFOF01000010.1::G00001Context members
BW28_RS01730BW28_RS01735
Partner locus tags
BW28_RS01730BW28_RS01735
Partner old locus tags
BW28_00080BW28_00085
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_070112163.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBW28_RS01730Primary locus identifier stored in the genes table.
Old locus tagBW28_00080Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JFOF01000010.1Sequence record reported by the local genomic context database.
Genomic interval12 826-13 521 nt696 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span12 826-14 879 ntGCF_001757605::NZ_JFOF01000010.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001757605::NZ_JFOF01000010.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JFOF01000010.1All displayed genes belong to this local TCS context.
Neighborhood span12 826-14 879 nt2 054 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
12 826 nt14 879 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BW28_RS01730GCF_001757605#BW28_RS01730
RROmpRCurrent focus
12 826-13 521 nt · Forward (+)
BW28_RS01735GCF_001757605#BW28_RS01735
HKClassic
13 518-14 879 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001757605#BW28_RS01730The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1164385
Simplified PFAM architecture for RROC_1164385
PFAM domain coverage: 186 / 231 aa (80.5%)
1 aa231 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[149-224]
- Domain count: 2
- Matched identifier: RROC_1164385
- Positioned domains: Response_reg 6-115 ; Response_reg 6-115 ; Trans_reg_C 149-224 ; Trans_reg_C 149-224
Cluster members and taxonomy
Representative gene: GCF_001757605#BW28_RS01730
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_001757605
AssemblyASM175760v1 · Contighaploid
Genome composition4 317 574 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 100 · HK 48 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key