1 Response_reg#1
7-116 aa · 110 aa · 46.2% of protein
Raw token
Response_reg:7:7.92e-38:116:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
A9L49_RS04055
Response regulator OmpR family
Bacillus cereus · GCF_001678165
ClassRRTypeOmpRLength238 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001678165#A9L49_RS04055Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length238 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 238 aa (79.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa238 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
156-233 aa · 78 aa · 32.8% of protein
Raw token
Trans_reg_C:156:1.54e-34:233:78:77- Raw architecture: Response_reg:7:7.92e-38:116:111:111#Trans_reg_C:156:1.54e-34:233:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001678165::NZ_LYVD01000004.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span221698-224189Genomic interval covered by the local TCS group.
Identifiers
Old locus tagA9L49_07395RefSeq proteinWP_000426861.1
Context group ID
GCF_001678165::NZ_LYVD01000004.1::G00016Context members
A9L49_RS04055A9L49_RS04060
Partner locus tags
A9L49_RS04055A9L49_RS04060
Partner old locus tags
A9L49_07395A9L49_07400
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000426861.1Primary protein accession used for annex mappings.
UniProt accessionA0AAX3HLA5Primary UniProt accession resolved in the annex database.
UniProt IDA0AAX3HLA5_BACTIDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagA9L49_RS04055Primary locus identifier stored in the genes table.
Old locus tagA9L49_07395Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LYVD01000004.1Sequence record reported by the local genomic context database.
Genomic interval221 698-222 414 nt717 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span221 698-224 189 ntGCF_001678165::NZ_LYVD01000004.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001678165::NZ_LYVD01000004.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LYVD01000004.1All displayed genes belong to this local TCS context.
Neighborhood span221 698-224 189 nt2 492 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
221 698 nt224 189 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
A9L49_RS04055GCF_001678165#A9L49_RS04055
RROmpRCurrent focus
221 698-222 414 nt · Forward (+)
A9L49_RS04060GCF_001678165#A9L49_RS04060
HKClassic
222 414-224 189 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000007825#BC_RS07320Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0932212
Simplified PFAM architecture for RROC_0932212
PFAM domain coverage: 187 / 238 aa (78.6%)
1 aa238 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[7-115] | Trans_reg_C[156-233]
- Domain count: 2
- Matched identifier: RROC_0932212
- Positioned domains: Response_reg 7-115 ; Response_reg 7-115 ; Trans_reg_C 156-233 ; Trans_reg_C 156-233
Cluster members and taxonomy
Representative gene: GCF_000007825#BC_RS07320
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 396 · GCF_001678165
AssemblyASM167816v1 · Scaffoldhaploid
Genome composition6 404 077 bp · 35,0% GCBacillus cereus
Signal transduction countsGenes 116 · HK 63 · RR 52CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key