1 Response_reg#1
9-128 aa · 120 aa · 48.4% of protein
Raw token
Response_reg:9:5.3e-29:128:120:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
APS66_RS00710
Response regulator NarL family
Bifidobacterium bifidum · GCF_001595435
ClassRRTypeNarLLength248 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001595435#APS66_RS00710Stable P2CS identifier used across views.
GenomeGCF_001595435Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length248 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage178 / 248 aa (71.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa248 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
185-242 aa · 58 aa · 23.4% of protein
Raw token
HTH_LUXR:185:6.95e-23:242:58:58- Raw architecture: Response_reg:9:5.3e-29:128:120:111#HTH_LUXR:185:6.95e-23:242:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001595435::NZ_LKUR01000001.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span176489-179991Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAPS66_00705RefSeq proteinWP_013390051.1
Context group ID
GCF_001595435::NZ_LKUR01000001.1::G00002Context members
APS66_RS00710APS66_RS00715
Partner locus tags
APS66_RS00710APS66_RS00715
Partner old locus tags
APS66_00705APS66_00710
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_013390051.1Primary protein accession used for annex mappings.
UniProt accessionA0A0H3EAY8Primary UniProt accession resolved in the annex database.
UniProt IDA0A0H3EAY8_BIFBPDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAPS66_RS00710Primary locus identifier stored in the genes table.
Old locus tagAPS66_00705Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LKUR01000001.1Sequence record reported by the local genomic context database.
Genomic interval176 489-177 235 nt747 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span176 489-179 991 ntGCF_001595435::NZ_LKUR01000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001595435::NZ_LKUR01000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LKUR01000001.1All displayed genes belong to this local TCS context.
Neighborhood span176 489-179 991 nt3 503 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
176 489 nt179 991 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
APS66_RS00710GCF_001595435#APS66_RS00710
RRNarLCurrent focus
176 489-177 235 nt · Reverse (-)
APS66_RS00715GCF_001595435#APS66_RS00715
HKClassic
177 343-179 991 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000165905#BBPR_RS06080Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0743345
Simplified PFAM architecture for RROC_0743345
PFAM domain coverage: 175 / 248 aa (70.6%)
1 aa248 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[9-127] | GerE[187-242]
- Domain count: 2
- Matched identifier: RROC_0743345
- Positioned domains: Response_reg 9-127 ; Response_reg 9-127 ; GerE 187-242 ; GerE 187-242
Cluster members and taxonomy
Representative gene: GCF_000165905#BBPR_RS06080
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 681 · GCF_001595435
AssemblyASM159543v1 · Contighaploid
Genome composition2 285 457 bp · 62,5% GCBifidobacterium bifidum
Signal transduction countsGenes 30 · HK 13 · RR 16CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key