1 Response_reg#1
5-117 aa · 113 aa · 52.6% of protein
Raw token
Response_reg:5:7.12e-34:117:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AT267_RS08125
Response regulator NarL family
Bacillus cereus · GCF_001583925
ClassRRTypeNarLLength215 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001583925#AT267_RS08125Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length215 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage170 / 215 aa (79.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa215 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
153-209 aa · 57 aa · 26.5% of protein
Raw token
HTH_LUXR:153:2.05e-24:209:57:58- Raw architecture: Response_reg:5:7.12e-34:117:113:111#HTH_LUXR:153:2.05e-24:209:57:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001583925::NZ_LOMN01000068.1::G00018
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span14636-16875Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAT267_24080RefSeq proteinWP_000695791.1
Context group ID
GCF_001583925::NZ_LOMN01000068.1::G00018Context members
AT267_RS08125AT267_RS08130
Partner locus tags
AT267_RS08125AT267_RS08130
Partner old locus tags
AT267_24080AT267_24085
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000695791.1Primary protein accession used for annex mappings.
UniProt accessionA0A5C5A0T9Primary UniProt accession resolved in the annex database.
UniProt IDA0A5C5A0T9_9BACIDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAT267_RS08125Primary locus identifier stored in the genes table.
Old locus tagAT267_24080Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LOMN01000068.1Sequence record reported by the local genomic context database.
Genomic interval14 636-15 283 nt648 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span14 636-16 875 ntGCF_001583925::NZ_LOMN01000068.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001583925::NZ_LOMN01000068.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LOMN01000068.1All displayed genes belong to this local TCS context.
Neighborhood span14 636-16 875 nt2 240 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
14 636 nt16 875 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AT267_RS08125GCF_001583925#AT267_RS08125
RRNarLCurrent focus
14 636-15 283 nt · Reverse (-)
AT267_RS08130GCF_001583925#AT267_RS08130
HKClassic
15 304-16 875 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001583925#AT267_RS08125The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1910316
Simplified PFAM architecture for RROC_1910316
PFAM domain coverage: 170 / 215 aa (79.1%)
1 aa215 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[5-117] | GerE[153-209]
- Domain count: 2
- Matched identifier: RROC_1910316
- Positioned domains: Response_reg 5-117 ; Response_reg 5-117 ; GerE 153-209 ; GerE 153-209
Cluster members and taxonomy
Representative gene: GCF_001583925#AT267_RS08125
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 396 · GCF_001583925
AssemblyASM158392v1 · Contighaploid
Genome composition5 916 679 bp · 35,0% GCBacillus cereus
Signal transduction countsGenes 101 · HK 52 · RR 49CheA 2 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key