1 Hpt#1
4-96 aa · 93 aa · 13.9% of protein
Raw token
Hpt:4:5.95e-16:96:93:84P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AT267_RS00260
Histidine kinase, CheA
Bacillus cereus · GCF_001583925
ClassHKTypeCheALength670 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001583925#AT267_RS00260Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HptH-kinase_dimHATPase_cCheW
Protein length670 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage426 / 670 aa (63.6%)Merged over positioned domains only.
Domain description1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheWSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa670 aa
Domain-by-domain annotation4 items
2 H-kinase_dim#2
287-346 aa · 60 aa · 9.0% of protein
Raw token
H-kinase_dim:287:0.00000000501:346:67:673 HATPase_c#3
394-533 aa · 140 aa · 20.9% of protein
Raw token
HATPase_c:394:1.15e-17:533:140:1094 CheW#4
538-670 aa · 133 aa · 19.9% of protein
Raw token
CheW:538:1.66e-21:670:139:138- Raw architecture: Hpt:4:5.95e-16:96:93:84#H-kinase_dim:287:0.00000000501:346:67:67#HATPase_c:394:1.15e-17:533:140:109#CheW:538:1.66e-21:670:139:138
- Domain description: 1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheW
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001583925::NZ_LOMN01000001.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span55475-57984Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAT267_24755RefSeq proteinWP_002194223.1
Context group ID
GCF_001583925::NZ_LOMN01000001.1::G00001Context members
AT267_RS00255AT267_RS00260
Partner locus tags
AT267_RS00255AT267_RS00260
Partner old locus tags
AT267_24750AT267_24755
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002194223.1Primary protein accession used for annex mappings.
UniProt accessionA0ABD7ZLC1Primary UniProt accession resolved in the annex database.
UniProt IDA0ABD7ZLC1_9BACIDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAT267_RS00260Primary locus identifier stored in the genes table.
Old locus tagAT267_24755Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LOMN01000001.1Sequence record reported by the local genomic context database.
Genomic interval55 972-57 984 nt2 013 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span55 475-57 984 ntGCF_001583925::NZ_LOMN01000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001583925::NZ_LOMN01000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LOMN01000001.1All displayed genes belong to this local TCS context.
Neighborhood span55 475-57 984 nt2 510 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
55 475 nt57 984 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AT267_RS00255GCF_001583925#AT267_RS00255
RRCheY
55 475-55 843 nt · Forward (+)
AT267_RS00260GCF_001583925#AT267_RS00260
HKCheACurrent focus
55 972-57 984 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001583925#AT267_RS00260The current gene is the representative for this cluster.
PFAM architectureHpt + P2 + H-kinase_dim + HATPase_c + CheW5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0845541
Simplified PFAM architecture for HKOC_0845541
PFAM domain coverage: 509 / 670 aa (76.0%)
1 aa670 aa
HptP2H-kinase_dimHATPase_cCheW
- Simplified architecture: Hpt + P2 + H-kinase_dim + HATPase_c + CheW
- Raw architecture: Hpt[4-103] | P2[148-225] | H-kinase_dim[287-345] | HATPase_c[394-533] | CheW[539-670]
- Domain count: 5
- Matched identifier: HKOC_0845541
- Positioned domains: Hpt 4-103 ; P2 148-225 ; H-kinase_dim 287-345 ; HATPase_c 394-533 ; CheW 539-670
Cluster members and taxonomy
Representative gene: GCF_001583925#AT267_RS00260
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 396 · GCF_001583925
AssemblyASM158392v1 · Contighaploid
Genome composition5 916 679 bp · 35,0% GCBacillus cereus
Signal transduction countsGenes 101 · HK 52 · RR 49CheA 2 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key