1 Response_reg#1
18-132 aa · 115 aa · 41.7% of protein
Raw token
Response_reg:18:4e-29:132:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AT280_RS00425
Response regulator Spo0A family
Bacillus cereus · GCF_001583855
ClassRRTypeSpo0ALength276 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001583855#AT280_RS00425Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regSpo0A_C
Protein length276 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage219 / 276 aa (79.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Spo0A_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa276 aa
Domain-by-domain annotation2 items
2 Spo0A_C#2
166-269 aa · 104 aa · 37.7% of protein
Raw token
Spo0A_C:166:3.72e-66:269:104:104- Raw architecture: Response_reg:18:4e-29:132:115:111#Spo0A_C:166:3.72e-66:269:104:104
- Domain description: 1 Response_reg,1 Spo0A_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001583855::NZ_LOQC01000001.1::G00001
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span68429-69223Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAT280_03085%2CAT280_04630RefSeq proteinWP_003161566.1
Context group ID
GCF_001583855::NZ_LOQC01000001.1::G00001Context members
AT280_RS00425
Partner locus tags
AT280_RS00425
Partner old locus tags
AT280_03085%2CAT280_04630
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003161566.1Primary protein accession used for annex mappings.
UniProt accessionA0A6L7H0R1Primary UniProt accession resolved in the annex database.
UniProt IDA0A6L7H0R1_BACANDisplay identifier provided by UniProt.
GO / PubMed8 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAT280_RS00425Primary locus identifier stored in the genes table.
Old locus tagAT280_03085%2CAT280_04630Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LOQC01000001.1Sequence record reported by the local genomic context database.
Genomic interval68 429-69 223 nt795 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span68 429-69 223 ntGCF_001583855::NZ_LOQC01000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001583855::NZ_LOQC01000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LOQC01000001.1All displayed genes belong to this local TCS context.
Neighborhood span68 429-69 223 nt795 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
68 429 nt69 223 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
AT280_RS00425GCF_001583855#AT280_RS00425
RRSpo0ACurrent focus
68 429-69 223 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001583855#AT280_RS00425The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Spo0A_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0603172
Simplified PFAM architecture for RROC_0603172
PFAM domain coverage: 219 / 276 aa (79.3%)
1 aa276 aa
Response_regSpo0A_C
- Simplified architecture: Response_reg + Spo0A_C
- Raw architecture: Response_reg[18-132] | Spo0A_C[166-269]
- Domain count: 2
- Matched identifier: RROC_0603172
- Positioned domains: Response_reg 18-132 ; Response_reg 18-132 ; Spo0A_C 166-269 ; Spo0A_C 166-269
Cluster members and taxonomy
Representative gene: GCF_001583855#AT280_RS00425
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 396 · GCF_001583855
AssemblyASM158385v1 · Contighaploid
Genome composition5 663 643 bp · 35,0% GCBacillus cereus
Signal transduction countsGenes 112 · HK 58 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key