1 PhoQ_Sensor#1
10-189 aa · 180 aa · 37.0% of protein
Raw token
PhoQ_Sensor:10:2.8e-113:189:180:179P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AUQ03_RS15460
Histidine kinase, Classic
Escherichia coli · GCF_001575615
ClassHKTypeClassicLength486 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001575615#AUQ03_RS15460Stable P2CS identifier used across views.
GenomeGCF_001575615Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Domain signature
Compact overview inferred from the domain field
PhoQ_SensorHAMPHisKAHATPase_c
Protein length486 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage411 / 486 aa (84.6%)Merged over positioned domains only.
Domain description1 PhoQ_Sensor,1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa486 aa
Domain-by-domain annotation4 items
2 HAMP#2
195-263 aa · 69 aa · 14.2% of protein
Raw token
HAMP:195:0.00000000343:263:69:693 HisKA#3
272-330 aa · 59 aa · 12.1% of protein
Raw token
HisKA:272:0.000000432:330:59:644 HATPase_c#4
374-476 aa · 103 aa · 21.2% of protein
Raw token
HATPase_c:374:1.7e-21:476:105:109- Raw architecture: PhoQ_Sensor:10:2.8e-113:189:180:179#HAMP:195:0.00000000343:263:69:69#HisKA:272:0.000000432:330:59:64#HATPase_c:374:1.7e-21:476:105:109
- Domain description: 1 PhoQ_Sensor,1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001575615::NZ_LOOQ01000019.1::G00026
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span92862-94993Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAUQ03_15460RefSeq proteinWP_000735411.1
Context group ID
GCF_001575615::NZ_LOOQ01000019.1::G00026Context members
AUQ03_RS15460AUQ03_RS15465
Partner locus tags
AUQ03_RS15460AUQ03_RS15465
Partner old locus tags
AUQ03_15460AUQ03_15465
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000735411.1Primary protein accession used for annex mappings.
UniProt accessionA0A0H0HFY3Primary UniProt accession resolved in the annex database.
UniProt IDA0A0H0HFY3_ECOLXDisplay identifier provided by UniProt.
GO / PubMed5 / 2Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAUQ03_RS15460Primary locus identifier stored in the genes table.
Old locus tagAUQ03_15460Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LOOQ01000019.1Sequence record reported by the local genomic context database.
Genomic interval92 862-94 322 nt1 461 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span92 862-94 993 ntGCF_001575615::NZ_LOOQ01000019.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001575615::NZ_LOOQ01000019.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LOOQ01000019.1All displayed genes belong to this local TCS context.
Neighborhood span92 862-94 993 nt2 132 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
92 862 nt94 993 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AUQ03_RS15460GCF_001575615#AUQ03_RS15460
HKClassicCurrent focus
92 862-94 322 nt · Reverse (-)
AUQ03_RS15465GCF_001575615#AUQ03_RS15465
RROmpR
94 322-94 993 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000009565#B21_RS06000Use this link to inspect the representative gene detail.
PFAM architecturePhoQ_Sensor + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1567070
Simplified PFAM architecture for HKOC_1567070
PFAM domain coverage: 280 / 486 aa (57.6%)
1 aa486 aa
PhoQ_SensorHATPase_c
- Simplified architecture: PhoQ_Sensor + HATPase_c
- Raw architecture: PhoQ_Sensor[10-188] | HATPase_c[375-475]
- Domain count: 2
- Matched identifier: HKOC_1567070
- Positioned domains: PhoQ_Sensor 10-188 ; HATPase_c 375-475
Cluster members and taxonomy
Representative gene: GCF_000009565#B21_RS06000
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 562 · GCF_001575615
AssemblyASM157561v1 · Scaffoldhaploid
Genome composition4 571 499 bp · 51,0% GCEscherichia coli
Signal transduction countsGenes 59 · HK 28 · RR 31CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusEscherichia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Escherichia
Related genes
Preview from the same derived genome key