1 Response_reg#1
9-121 aa · 113 aa · 79.6% of protein
Raw token
Response_reg:9:4.42e-38:121:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AUQ03_RS00255
Response regulator, CheY family
Escherichia coli · GCF_001575615
ClassRRTypeCheYLength142 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001575615#AUQ03_RS00255Stable P2CS identifier used across views.
GenomeGCF_001575615Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length142 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage113 / 142 aa (79.6%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa142 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:9:4.42e-38:121:113:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001575615::NZ_LOOQ01000001.1::G00002
Group size22 locus tags listed below.
HK / RR0 / 2Counts resolved for the local TCS neighborhood.
Context span42009-43501Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAUQ03_00255RefSeq proteinWP_061354929.1
Context group ID
GCF_001575615::NZ_LOOQ01000001.1::G00002Context members
AUQ03_RS00250AUQ03_RS00255
Partner locus tags
AUQ03_RS00250AUQ03_RS00255
Partner old locus tags
AUQ03_00250AUQ03_00255
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_061354929.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAUQ03_RS00255Primary locus identifier stored in the genes table.
Old locus tagAUQ03_00255Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LOOQ01000001.1Sequence record reported by the local genomic context database.
Genomic interval43 073-43 501 nt429 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span42 009-43 501 ntGCF_001575615::NZ_LOOQ01000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001575615::NZ_LOOQ01000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LOOQ01000001.1All displayed genes belong to this local TCS context.
Neighborhood span42 009-43 501 nt1 493 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
42 009 nt43 501 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AUQ03_RS00250GCF_001575615#AUQ03_RS00250
RRCheB
42 009-43 058 nt · Forward (+)
AUQ03_RS00255GCF_001575615#AUQ03_RS00255
RRCheYCurrent focus
43 073-43 501 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001575615#AUQ03_RS00255The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2259442
Simplified PFAM architecture for RROC_2259442
PFAM domain coverage: 112 / 142 aa (78.9%)
1 aa142 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[9-120]
- Domain count: 1
- Matched identifier: RROC_2259442
- Positioned domains: Response_reg 9-120 ; Response_reg 9-120
Cluster members and taxonomy
Representative gene: GCF_001575615#AUQ03_RS00255
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 562 · GCF_001575615
AssemblyASM157561v1 · Scaffoldhaploid
Genome composition4 571 499 bp · 51,0% GCEscherichia coli
Signal transduction countsGenes 59 · HK 28 · RR 31CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusEscherichia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Escherichia
Related genes
Preview from the same derived genome key