1 HAMP#1
140-207 aa · 68 aa · 15.7% of protein
Raw token
HAMP:140:0.0000000351:207:72:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AUQ03_RS01715
Histidine kinase, Classic
Escherichia coli · GCF_001575615
ClassHKTypeClassicLength433 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001575615#AUQ03_RS01715Stable P2CS identifier used across views.
GenomeGCF_001575615Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length433 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage235 / 433 aa (54.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa433 aa
Domain-by-domain annotation3 items
2 HisKA#2
211-269 aa · 59 aa · 13.6% of protein
Raw token
HisKA:211:0.000000000298:269:62:643 HATPase_c#3
316-423 aa · 108 aa · 24.9% of protein
Raw token
HATPase_c:316:5.49e-28:423:109:109- Raw architecture: HAMP:140:0.0000000351:207:72:69#HisKA:211:0.000000000298:269:62:64#HATPase_c:316:5.49e-28:423:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001575615::NZ_LOOQ01000001.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span328906-330930Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAUQ03_01715RefSeq proteinWP_000732510.1
Context group ID
GCF_001575615::NZ_LOOQ01000001.1::G00003Context members
AUQ03_RS01715AUQ03_RS01720
Partner locus tags
AUQ03_RS01715AUQ03_RS01720
Partner old locus tags
AUQ03_01715AUQ03_01720
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000732510.1Primary protein accession used for annex mappings.
UniProt accessionW8T9Y2Primary UniProt accession resolved in the annex database.
UniProt IDW8T9Y2_ECOLXDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAUQ03_RS01715Primary locus identifier stored in the genes table.
Old locus tagAUQ03_01715Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LOOQ01000001.1Sequence record reported by the local genomic context database.
Genomic interval328 906-330 207 nt1 302 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span328 906-330 930 ntGCF_001575615::NZ_LOOQ01000001.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001575615::NZ_LOOQ01000001.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LOOQ01000001.1All displayed genes belong to this local TCS context.
Neighborhood span328 906-330 930 nt2 025 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
328 906 nt330 930 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AUQ03_RS01715GCF_001575615#AUQ03_RS01715
HKClassicCurrent focus
328 906-330 207 nt · Reverse (-)
AUQ03_RS01720GCF_001575615#AUQ03_RS01720
RROmpR
330 211-330 930 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000009565#B21_RS08285Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2140067
Simplified PFAM architecture for HKOC_2140067
PFAM domain coverage: 209 / 433 aa (48.3%)
1 aa433 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[163-206] | HisKA[212-270] | HATPase_c[318-423]
- Domain count: 3
- Matched identifier: HKOC_2140067
- Positioned domains: HAMP 163-206 ; HisKA 212-270 ; HATPase_c 318-423
Cluster members and taxonomy
Representative gene: GCF_000009565#B21_RS08285
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 562 · GCF_001575615
AssemblyASM157561v1 · Scaffoldhaploid
Genome composition4 571 499 bp · 51,0% GCEscherichia coli
Signal transduction countsGenes 59 · HK 28 · RR 31CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusEscherichia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Escherichia
Related genes
Preview from the same derived genome key