1 Response_reg#1
6-118 aa · 113 aa · 53.8% of protein
Raw token
Response_reg:6:4.93e-36:118:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AUQ03_RS03610
Response regulator, unclassified
Escherichia coli · GCF_001575615
ClassRRTypeunclassifiedLength210 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001575615#AUQ03_RS03610Stable P2CS identifier used across views.
GenomeGCF_001575615Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Domain signature
Compact overview inferred from the domain field
Response_regGerE
Protein length210 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 210 aa (80.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 GerESummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa210 aa
Domain-by-domain annotation2 items
2 GerE#2
149-204 aa · 56 aa · 26.7% of protein
Raw token
GerE:149:1.08e-24:204:56:57- Raw architecture: Response_reg:6:4.93e-36:118:113:111#GerE:149:1.08e-24:204:56:57
- Domain description: 1 Response_reg,1 GerE
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001575615::NZ_LOOQ01000004.1::G00006
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span266394-267026Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAUQ03_03610RefSeq proteinWP_000805422.1
Context group ID
GCF_001575615::NZ_LOOQ01000004.1::G00006Context members
AUQ03_RS03610
Partner locus tags
AUQ03_RS03610
Partner old locus tags
AUQ03_03610
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000805422.1Primary protein accession used for annex mappings.
UniProt accessionA0AAN3ZFM6Primary UniProt accession resolved in the annex database.
UniProt IDA0AAN3ZFM6_SHIDYDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAUQ03_RS03610Primary locus identifier stored in the genes table.
Old locus tagAUQ03_03610Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LOOQ01000004.1Sequence record reported by the local genomic context database.
Genomic interval266 394-267 026 nt633 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span266 394-267 026 ntGCF_001575615::NZ_LOOQ01000004.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001575615::NZ_LOOQ01000004.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LOOQ01000004.1All displayed genes belong to this local TCS context.
Neighborhood span266 394-267 026 nt633 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
266 394 nt267 026 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
AUQ03_RS03610GCF_001575615#AUQ03_RS03610
RRunclassifiedCurrent focus
266 394-267 026 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000009565#B21_RS02520Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2018856
Simplified PFAM architecture for RROC_2018856
PFAM domain coverage: 169 / 210 aa (80.5%)
1 aa210 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[6-118] | GerE[149-204]
- Domain count: 2
- Matched identifier: RROC_2018856
- Positioned domains: Response_reg 6-118 ; Response_reg 6-118 ; GerE 149-204 ; GerE 149-204
Cluster members and taxonomy
Representative gene: GCF_000009565#B21_RS02520
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 562 · GCF_001575615
AssemblyASM157561v1 · Scaffoldhaploid
Genome composition4 571 499 bp · 51,0% GCEscherichia coli
Signal transduction countsGenes 59 · HK 28 · RR 31CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusEscherichia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Escherichia
Related genes
Preview from the same derived genome key