1 Response_reg#1
4-114 aa · 111 aa · 50.0% of protein
Raw token
Response_reg:4:9.48e-35:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AWN56_RS04785
Response regulator OmpR family
Enterococcus faecium · GCF_001543565
ClassRRTypeOmpRLength222 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001543565#AWN56_RS04785Stable P2CS identifier used across views.
GenomeGCF_001543565Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length222 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage180 / 222 aa (81.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa222 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
151-219 aa · 69 aa · 31.1% of protein
Raw token
Trans_reg_C:151:4.89e-24:219:71:77- Raw architecture: Response_reg:4:9.48e-35:114:111:111#Trans_reg_C:151:4.89e-24:219:71:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001543565::NZ_LRAV01000079.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span27798-29512Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAWN56_04800RefSeq proteinWP_002297412.1
Context group ID
GCF_001543565::NZ_LRAV01000079.1::G00007Context members
AWN56_RS04785AWN56_RS04790
Partner locus tags
AWN56_RS04785AWN56_RS04790
Partner old locus tags
AWN56_04800AWN56_04805
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002297412.1Primary protein accession used for annex mappings.
UniProt accessionA0A829F512Primary UniProt accession resolved in the annex database.
UniProt IDA0A829F512_ENTFCDisplay identifier provided by UniProt.
GO / PubMed7 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAWN56_RS04785Primary locus identifier stored in the genes table.
Old locus tagAWN56_04800Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LRAV01000079.1Sequence record reported by the local genomic context database.
Genomic interval27 798-28 466 nt669 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span27 798-29 512 ntGCF_001543565::NZ_LRAV01000079.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001543565::NZ_LRAV01000079.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LRAV01000079.1All displayed genes belong to this local TCS context.
Neighborhood span27 798-29 512 nt1 715 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
27 798 nt29 512 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AWN56_RS04785GCF_001543565#AWN56_RS04785
RROmpRCurrent focus
27 798-28 466 nt · Forward (+)
AWN56_RS04790GCF_001543565#AWN56_RS04790
HKClassic
28 469-29 512 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000147235#HMPREF9525_RS10520Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1637568
Simplified PFAM architecture for RROC_1637568
PFAM domain coverage: 180 / 222 aa (81.1%)
1 aa222 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[150-219]
- Domain count: 2
- Matched identifier: RROC_1637568
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 150-219 ; Trans_reg_C 150-219
Cluster members and taxonomy
Representative gene: GCF_000147235#HMPREF9525_RS10520
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 352 · GCF_001543565
AssemblyASM154356v1 · Scaffoldhaploid
Genome composition3 016 176 bp · 38,0% GCEnterococcus faecium
Signal transduction countsGenes 42 · HK 20 · RR 22CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key