1 HisKA#1
237-296 aa · 60 aa · 13.2% of protein
Raw token
HisKA:237:0.000000000147:296:60:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AWN56_RS00615
Histidine kinase, Classic
Enterococcus faecium · GCF_001543565
ClassHKTypeClassicLength456 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001543565#AWN56_RS00615Stable P2CS identifier used across views.
GenomeGCF_001543565Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length456 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage174 / 456 aa (38.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa456 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
341-454 aa · 114 aa · 25.0% of protein
Raw token
HATPase_c:341:7.19e-19:454:114:109- Raw architecture: HisKA:237:0.000000000147:296:60:64#HATPase_c:341:7.19e-19:454:114:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001543565::NZ_LRAV01000008.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span7480-9500Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAWN56_00620RefSeq proteinWP_228841383.1
Context group ID
GCF_001543565::NZ_LRAV01000008.1::G00001Context members
AWN56_RS00610AWN56_RS00615
Partner locus tags
AWN56_RS00610AWN56_RS00615
Partner old locus tags
AWN56_00615AWN56_00620
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_228841383.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAWN56_RS00615Primary locus identifier stored in the genes table.
Old locus tagAWN56_00620Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LRAV01000008.1Sequence record reported by the local genomic context database.
Genomic interval8 130-9 500 nt1 371 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span7 480-9 500 ntGCF_001543565::NZ_LRAV01000008.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001543565::NZ_LRAV01000008.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LRAV01000008.1All displayed genes belong to this local TCS context.
Neighborhood span7 480-9 500 nt2 021 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
7 480 nt9 500 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AWN56_RS00610GCF_001543565#AWN56_RS00610
RROmpR
7 480-8 148 nt · Forward (+)
AWN56_RS00615GCF_001543565#AWN56_RS00615
HKClassicCurrent focus
8 130-9 500 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001543555#AWN51_RS03760Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1889287
Simplified PFAM architecture for HKOC_1889287
PFAM domain coverage: 173 / 456 aa (37.9%)
1 aa456 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[237-296] | HATPase_c[341-453]
- Domain count: 2
- Matched identifier: HKOC_1889287
- Positioned domains: HisKA 237-296 ; HATPase_c 341-453
Cluster members and taxonomy
Representative gene: GCF_001543555#AWN51_RS03760
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 352 · GCF_001543565
AssemblyASM154356v1 · Scaffoldhaploid
Genome composition3 016 176 bp · 38,0% GCEnterococcus faecium
Signal transduction countsGenes 42 · HK 20 · RR 22CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key