1 dCache_1#1
182-294 aa · 113 aa · 18.8% of protein
Raw token
dCache_1:182:0.0000000000171:294:113:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BN3261_RS12320
Histidine kinase, Classic
Blautia massiliensis (ex Durand et al. 2017) · GCF_001487165
ClassHKTypeClassicLength602 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001487165#BN3261_RS12320Stable P2CS identifier used across views.
GenomeGCF_001487165Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length602 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage370 / 602 aa (61.5%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa602 aa
Domain-by-domain annotation4 items
2 HAMP#2
311-380 aa · 70 aa · 11.6% of protein
Raw token
HAMP:311:0.00000000000217:380:70:693 His_kinase#3
396-473 aa · 78 aa · 13.0% of protein
Raw token
His_kinase:396:1.58e-34:473:79:804 HATPase_c#4
487-595 aa · 109 aa · 18.1% of protein
Raw token
HATPase_c:487:1.02e-17:595:111:109- Raw architecture: dCache_1:182:0.0000000000171:294:113:195#HAMP:311:0.00000000000217:380:70:69#His_kinase:396:1.58e-34:473:79:80#HATPase_c:487:1.02e-17:595:111:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001487165::NZ_LN913006.1::G00039
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2478665-2482069Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_001487165::NZ_LN913006.1::G00039Context members
BN3261_RS12320BN3261_RS12325
Partner locus tags
BN3261_RS12320BN3261_RS12325
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_015526628.1Primary protein accession used for annex mappings.
UniProt accessionA0ABW9X416Primary UniProt accession resolved in the annex database.
UniProt IDA0ABW9X416_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBN3261_RS12320Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_LN913006.1Sequence record reported by the local genomic context database.
Genomic interval2 478 665-2 480 473 nt1 809 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 478 665-2 482 069 ntGCF_001487165::NZ_LN913006.1::G00039
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001487165::NZ_LN913006.1::G00039Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LN913006.1All displayed genes belong to this local TCS context.
Neighborhood span2 478 665-2 482 069 nt3 405 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 478 665 nt2 482 069 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BN3261_RS12320GCF_001487165#BN3261_RS12320
HKClassicCurrent focus
2 478 665-2 480 473 nt · Reverse (-)
BN3261_RS12325GCF_001487165#BN3261_RS12325
RRunclassified
2 480 477-2 482 069 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000209835#CK1_RS12795Use this link to inspect the representative gene detail.
PFAM architecturedCache_1 + HAMP + His_kinase + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1041904
Simplified PFAM architecture for HKOC_1041904
PFAM domain coverage: 472 / 602 aa (78.4%)
1 aa602 aa
dCache_1HAMPHis_kinaseHATPase_c
- Simplified architecture: dCache_1 + HAMP + His_kinase + HATPase_c
- Raw architecture: dCache_1[54-293] | HAMP[333-379] | His_kinase[396-473] | HATPase_c[490-596]
- Domain count: 4
- Matched identifier: HKOC_1041904
- Positioned domains: dCache_1 54-293 ; HAMP 333-379 ; His_kinase 396-473 ; HATPase_c 490-596
Cluster members and taxonomy
Representative gene: GCF_000209835#CK1_RS12795
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 737 424 · GCF_001487165
AssemblyBlautia massiliensis1 · Scaffoldhaploid
Genome composition3 717 343 bp · 44,0% GCBlautia massiliensis (ex Durand et al. 2017)
Signal transduction countsGenes 89 · HK 41 · RR 47CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key