1 Response_reg#1
4-113 aa · 110 aa · 47.2% of protein
Raw token
Response_reg:4:6.38e-37:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BN3261_RS08280
Response regulator OmpR family
Blautia massiliensis (ex Durand et al. 2017) · GCF_001487165
ClassRRTypeOmpRLength233 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001487165#BN3261_RS08280Stable P2CS identifier used across views.
GenomeGCF_001487165Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length233 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 233 aa (80.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa233 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
152-228 aa · 77 aa · 33.0% of protein
Raw token
Trans_reg_C:152:2.01e-31:228:77:77- Raw architecture: Response_reg:4:6.38e-37:113:111:111#Trans_reg_C:152:2.01e-31:228:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001487165::NZ_LN913006.1::G00028
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1579997-1583425Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_001487165::NZ_LN913006.1::G00028Context members
BN3261_RS08280BN3261_RS08285
Partner locus tags
BN3261_RS08280BN3261_RS08285
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_059085991.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBN3261_RS08280Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_LN913006.1Sequence record reported by the local genomic context database.
Genomic interval1 579 997-1 580 698 nt702 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 579 997-1 583 425 ntGCF_001487165::NZ_LN913006.1::G00028
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001487165::NZ_LN913006.1::G00028Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LN913006.1All displayed genes belong to this local TCS context.
Neighborhood span1 579 997-1 583 425 nt3 429 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 579 997 nt1 583 425 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BN3261_RS08280GCF_001487165#BN3261_RS08280
RROmpRCurrent focus
1 579 997-1 580 698 nt · Forward (+)
BN3261_RS08285GCF_001487165#BN3261_RS08285
HKClassic
1 580 741-1 583 425 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001487165#BN3261_RS08280The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1085677
Simplified PFAM architecture for RROC_1085677
PFAM domain coverage: 186 / 233 aa (79.8%)
1 aa233 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[152-227]
- Domain count: 2
- Matched identifier: RROC_1085677
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 152-227 ; Trans_reg_C 152-227
Cluster members and taxonomy
Representative gene: GCF_001487165#BN3261_RS08280
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 737 424 · GCF_001487165
AssemblyBlautia massiliensis1 · Scaffoldhaploid
Genome composition3 717 343 bp · 44,0% GCBlautia massiliensis (ex Durand et al. 2017)
Signal transduction countsGenes 89 · HK 41 · RR 47CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key