1 HAMP#1
283-349 aa · 67 aa · 11.8% of protein
Raw token
HAMP:283:0.0000000000203:349:67:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BN3261_RS02860
Histidine kinase, Classic
Blautia massiliensis (ex Durand et al. 2017) · GCF_001487165
ClassHKTypeClassicLength567 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001487165#BN3261_RS02860Stable P2CS identifier used across views.
GenomeGCF_001487165Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length567 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage247 / 567 aa (43.6%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa567 aa
Domain-by-domain annotation3 items
2 His_kinase#2
365-443 aa · 79 aa · 13.9% of protein
Raw token
His_kinase:365:2.77e-27:443:79:803 HATPase_c#3
461-561 aa · 101 aa · 17.8% of protein
Raw token
HATPase_c:461:0.0000000000128:561:110:109- Raw architecture: HAMP:283:0.0000000000203:349:67:69#His_kinase:365:2.77e-27:443:79:80#HATPase_c:461:0.0000000000128:561:110:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001487165::NZ_LN913006.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span396529-399745Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_001487165::NZ_LN913006.1::G00010Context members
BN3261_RS02855BN3261_RS02860
Partner locus tags
BN3261_RS02855BN3261_RS02860
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_021650824.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW4W446Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW4W446_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBN3261_RS02860Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_LN913006.1Sequence record reported by the local genomic context database.
Genomic interval398 042-399 745 nt1 704 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span396 529-399 745 ntGCF_001487165::NZ_LN913006.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001487165::NZ_LN913006.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LN913006.1All displayed genes belong to this local TCS context.
Neighborhood span396 529-399 745 nt3 217 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
396 529 nt399 745 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BN3261_RS02855GCF_001487165#BN3261_RS02855
RRunclassified
396 529-398 067 nt · Forward (+)
BN3261_RS02860GCF_001487165#BN3261_RS02860
HKClassicCurrent focus
398 042-399 745 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003184505#DMI82_RS19165Use this link to inspect the representative gene detail.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1217470
Simplified PFAM architecture for HKOC_1217470
PFAM domain coverage: 227 / 569 aa (39.9%)
1 aa569 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[301-350] | His_kinase[367-443] | HATPase_c[464-563]
- Domain count: 3
- Matched identifier: HKOC_1217470
- Positioned domains: HAMP 301-350 ; His_kinase 367-443 ; HATPase_c 464-563
Cluster members and taxonomy
Representative gene: GCF_003184505#DMI82_RS19165
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 737 424 · GCF_001487165
AssemblyBlautia massiliensis1 · Scaffoldhaploid
Genome composition3 717 343 bp · 44,0% GCBlautia massiliensis (ex Durand et al. 2017)
Signal transduction countsGenes 89 · HK 41 · RR 47CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key