1 HAMP#1
300-376 aa · 77 aa · 12.7% of protein
Raw token
HAMP:300:0.0000000697:376:77:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BN3261_RS02470
Histidine kinase, Classic
Blautia massiliensis (ex Durand et al. 2017) · GCF_001487165
ClassHKTypeClassicLength608 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001487165#BN3261_RS02470Stable P2CS identifier used across views.
GenomeGCF_001487165Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length608 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage259 / 608 aa (42.6%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa608 aa
Domain-by-domain annotation3 items
2 His_kinase#2
393-472 aa · 80 aa · 13.2% of protein
Raw token
His_kinase:393:4.5e-24:472:80:803 HATPase_c#3
492-593 aa · 102 aa · 16.8% of protein
Raw token
HATPase_c:492:0.000000000305:593:103:109- Raw architecture: HAMP:300:0.0000000697:376:77:69#His_kinase:393:4.5e-24:472:80:80#HATPase_c:492:0.000000000305:593:103:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001487165::NZ_LN913006.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span312542-315938Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_001487165::NZ_LN913006.1::G00008Context members
BN3261_RS02465BN3261_RS02470
Partner locus tags
BN3261_RS02465BN3261_RS02470
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_059085385.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW4W3X6Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW4W3X6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBN3261_RS02470Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_LN913006.1Sequence record reported by the local genomic context database.
Genomic interval314 112-315 938 nt1 827 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span312 542-315 938 ntGCF_001487165::NZ_LN913006.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001487165::NZ_LN913006.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LN913006.1All displayed genes belong to this local TCS context.
Neighborhood span312 542-315 938 nt3 397 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
312 542 nt315 938 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BN3261_RS02465GCF_001487165#BN3261_RS02465
RRunclassified
312 542-314 137 nt · Reverse (-)
BN3261_RS02470GCF_001487165#BN3261_RS02470
HKClassicCurrent focus
314 112-315 938 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001487165#BN3261_RS02470The current gene is the representative for this cluster.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1013727
Simplified PFAM architecture for HKOC_1013727
PFAM domain coverage: 181 / 608 aa (29.8%)
1 aa608 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[394-471] | HATPase_c[492-594]
- Domain count: 2
- Matched identifier: HKOC_1013727
- Positioned domains: His_kinase 394-471 ; HATPase_c 492-594
Cluster members and taxonomy
Representative gene: GCF_001487165#BN3261_RS02470
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 737 424 · GCF_001487165
AssemblyBlautia massiliensis1 · Scaffoldhaploid
Genome composition3 717 343 bp · 44,0% GCBlautia massiliensis (ex Durand et al. 2017)
Signal transduction countsGenes 89 · HK 41 · RR 47CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key