1 HD#1
117-240 aa · 124 aa · 25.9% of protein
Raw token
HD:117:2.23e-16:240:125:110P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
M72_RS13445
Response regulator RpfG family
Roseburia faecis · GCF_001406815
ClassRRTypeRpfGLength479 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001406815#M72_RS13445Stable P2CS identifier used across views.
GenomeGCF_001406815Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
HDResponse_reg
Protein length479 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage227 / 479 aa (47.4%)Merged over positioned domains only.
Domain description1 HD,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Response_reg#2
361-463 aa · 103 aa · 21.5% of protein
Raw token
Response_reg:361:1.92e-21:463:104:111- Raw architecture: HD:117:2.23e-16:240:125:110#Response_reg:361:1.92e-21:463:104:111
- Domain description: 1 HD,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001406815::NZ_CVRR01000060.1::G00055
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span24282-28425Genomic interval covered by the local TCS group.
Identifiers
Old locus tagM72_13931RefSeq proteinWP_055068587.1
Context group ID
GCF_001406815::NZ_CVRR01000060.1::G00055Context members
M72_RS13440M72_RS13445
Partner locus tags
M72_RS13440M72_RS13445
Partner old locus tags
M72_13921M72_13931
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055068587.1Primary protein accession used for annex mappings.
UniProt accessionA0A0M6WZ21Primary UniProt accession resolved in the annex database.
UniProt IDA0A0M6WZ21_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagM72_RS13445Primary locus identifier stored in the genes table.
Old locus tagM72_13931Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CVRR01000060.1Sequence record reported by the local genomic context database.
Genomic interval26 986-28 425 nt1 440 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span24 282-28 425 ntGCF_001406815::NZ_CVRR01000060.1::G00055
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001406815::NZ_CVRR01000060.1::G00055Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CVRR01000060.1All displayed genes belong to this local TCS context.
Neighborhood span24 282-28 425 nt4 144 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
24 282 nt28 425 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
M72_RS13440GCF_001406815#M72_RS13440
HKHybrid
24 282-26 978 nt · Reverse (-)
M72_RS13445GCF_001406815#M72_RS13445
RRRpfGCurrent focus
26 986-28 425 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406815#M72_RS13445The current gene is the representative for this cluster.
PFAM architectureHD_5 + Response_reg2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0184717
Simplified PFAM architecture for RROC_0184717
PFAM domain coverage: 260 / 479 aa (54.3%)
1 aa479 aa
HD_5Response_reg
- Simplified architecture: HD_5 + Response_reg
- Raw architecture: HD_5[119-270] | Response_reg[361-468]
- Domain count: 2
- Matched identifier: RROC_0184717
- Positioned domains: HD_5 119-270 ; HD_5 119-270 ; Response_reg 361-468 ; Response_reg 361-468
Cluster members and taxonomy
Representative gene: GCF_001406815#M72_RS13445
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 301 302 · GCF_001406815
AssemblyM72 · Contighaploid
Genome composition3 334 694 bp · 43,0% GCRoseburia faecis
Signal transduction countsGenes 110 · HK 47 · RR 61CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key