1 Response_reg#1
3-115 aa · 113 aa · 47.7% of protein
Raw token
Response_reg:3:1.69e-16:115:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
M72_RS00530
Response regulator LytTR family
Roseburia faecis · GCF_001406815
ClassRRTypeLytTRLength237 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001406815#M72_RS00530Stable P2CS identifier used across views.
GenomeGCF_001406815Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length237 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage205 / 237 aa (86.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 LytTR#2
138-229 aa · 92 aa · 38.8% of protein
Raw token
LytTR:138:8.76e-21:229:97:98- Raw architecture: Response_reg:3:1.69e-16:115:115:111#LytTR:138:8.76e-21:229:97:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001406815::NZ_CVRR01000004.1::G00004
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span176-889Genomic interval covered by the local TCS group.
Identifiers
Old locus tagM72_19901RefSeq proteinWP_022046012.1
Context group ID
GCF_001406815::NZ_CVRR01000004.1::G00004Context members
M72_RS00530
Partner locus tags
M72_RS00530
Partner old locus tags
M72_19901
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_022046012.1Primary protein accession used for annex mappings.
UniProt accessionA0A0M6WB91Primary UniProt accession resolved in the annex database.
UniProt IDA0A0M6WB91_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagM72_RS00530Primary locus identifier stored in the genes table.
Old locus tagM72_19901Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CVRR01000004.1Sequence record reported by the local genomic context database.
Genomic interval176-889 nt714 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span176-889 ntGCF_001406815::NZ_CVRR01000004.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001406815::NZ_CVRR01000004.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CVRR01000004.1All displayed genes belong to this local TCS context.
Neighborhood span176-889 nt714 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
176 nt889 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
M72_RS00530GCF_001406815#M72_RS00530
RRLytTRCurrent focus
176-889 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406815#M72_RS00530The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0964721
Simplified PFAM architecture for RROC_0964721
PFAM domain coverage: 204 / 237 aa (86.1%)
1 aa237 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[3-115] | LytTR[139-229]
- Domain count: 2
- Matched identifier: RROC_0964721
- Positioned domains: Response_reg 3-115 ; Response_reg 3-115 ; LytTR 139-229 ; LytTR 139-229
Cluster members and taxonomy
Representative gene: GCF_001406815#M72_RS00530
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 301 302 · GCF_001406815
AssemblyM72 · Contighaploid
Genome composition3 334 694 bp · 43,0% GCRoseburia faecis
Signal transduction countsGenes 110 · HK 47 · RR 61CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key