1 HisKA#1
255-320 aa · 66 aa · 13.7% of protein
Raw token
HisKA:255:0.000000000000656:320:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
M72_RS12815
Histidine kinase, Classic
Roseburia faecis · GCF_001406815
ClassHKTypeClassicLength483 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001406815#M72_RS12815Stable P2CS identifier used across views.
GenomeGCF_001406815Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length483 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage178 / 483 aa (36.9%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa483 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
368-479 aa · 112 aa · 23.2% of protein
Raw token
HATPase_c:368:4.8e-28:479:112:109- Raw architecture: HisKA:255:0.000000000000656:320:66:64#HATPase_c:368:4.8e-28:479:112:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001406815::NZ_CVRR01000048.1::G00052
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span80355-82523Genomic interval covered by the local TCS group.
Identifiers
Old locus tagM72_12851RefSeq proteinWP_022046415.1
Context group ID
GCF_001406815::NZ_CVRR01000048.1::G00052Context members
M72_RS12810M72_RS12815
Partner locus tags
M72_RS12810M72_RS12815
Partner old locus tags
M72_12841M72_12851
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_022046415.1Primary protein accession used for annex mappings.
UniProt accessionA0A0M6WV57Primary UniProt accession resolved in the annex database.
UniProt IDA0A0M6WV57_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagM72_RS12815Primary locus identifier stored in the genes table.
Old locus tagM72_12851Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CVRR01000048.1Sequence record reported by the local genomic context database.
Genomic interval81 072-82 523 nt1 452 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span80 355-82 523 ntGCF_001406815::NZ_CVRR01000048.1::G00052
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001406815::NZ_CVRR01000048.1::G00052Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CVRR01000048.1All displayed genes belong to this local TCS context.
Neighborhood span80 355-82 523 nt2 169 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
80 355 nt82 523 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
M72_RS12810GCF_001406815#M72_RS12810
RROmpR
80 355-81 047 nt · Forward (+)
M72_RS12815GCF_001406815#M72_RS12815
HKClassicCurrent focus
81 072-82 523 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406815#M72_RS12815The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1594884
Simplified PFAM architecture for HKOC_1594884
PFAM domain coverage: 178 / 483 aa (36.9%)
1 aa483 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[255-320] | HATPase_c[368-479]
- Domain count: 2
- Matched identifier: HKOC_1594884
- Positioned domains: HisKA 255-320 ; HATPase_c 368-479
Cluster members and taxonomy
Representative gene: GCF_001406815#M72_RS12815
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 301 302 · GCF_001406815
AssemblyM72 · Contighaploid
Genome composition3 334 694 bp · 43,0% GCRoseburia faecis
Signal transduction countsGenes 110 · HK 47 · RR 61CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key