1 Response_reg#1
5-117 aa · 113 aa · 53.1% of protein
Raw token
Response_reg:5:7.42e-34:117:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
M72_RS07005
Response regulator NarL family
Roseburia faecis · GCF_001406815
ClassRRTypeNarLLength213 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001406815#M72_RS07005Stable P2CS identifier used across views.
GenomeGCF_001406815Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length213 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage170 / 213 aa (79.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa213 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
149-205 aa · 57 aa · 26.8% of protein
Raw token
HTH_LUXR:149:7.49e-25:205:57:58- Raw architecture: Response_reg:5:7.42e-34:117:113:111#HTH_LUXR:149:7.49e-25:205:57:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001406815::NZ_CVRR01000018.1::G00032
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span6814-8477Genomic interval covered by the local TCS group.
Identifiers
Old locus tagM72_28641RefSeq proteinWP_055067714.1
Context group ID
GCF_001406815::NZ_CVRR01000018.1::G00032Context members
M72_RS07005M72_RS07010
Partner locus tags
M72_RS07005M72_RS07010
Partner old locus tags
M72_28641M72_28651
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055067714.1Primary protein accession used for annex mappings.
UniProt accessionA0A0M6WKP1Primary UniProt accession resolved in the annex database.
UniProt IDA0A0M6WKP1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagM72_RS07005Primary locus identifier stored in the genes table.
Old locus tagM72_28641Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CVRR01000018.1Sequence record reported by the local genomic context database.
Genomic interval6 814-7 455 nt642 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span6 814-8 477 ntGCF_001406815::NZ_CVRR01000018.1::G00032
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001406815::NZ_CVRR01000018.1::G00032Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CVRR01000018.1All displayed genes belong to this local TCS context.
Neighborhood span6 814-8 477 nt1 664 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
6 814 nt8 477 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
M72_RS07005GCF_001406815#M72_RS07005
RRNarLCurrent focus
6 814-7 455 nt · Reverse (-)
M72_RS07010GCF_001406815#M72_RS07010
HKClassic
7 458-8 477 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406815#M72_RS07005The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1964977
Simplified PFAM architecture for RROC_1964977
PFAM domain coverage: 169 / 213 aa (79.3%)
1 aa213 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[5-116] | GerE[149-205]
- Domain count: 2
- Matched identifier: RROC_1964977
- Positioned domains: Response_reg 5-116 ; Response_reg 5-116 ; GerE 149-205 ; GerE 149-205
Cluster members and taxonomy
Representative gene: GCF_001406815#M72_RS07005
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 301 302 · GCF_001406815
AssemblyM72 · Contighaploid
Genome composition3 334 694 bp · 43,0% GCRoseburia faecis
Signal transduction countsGenes 110 · HK 47 · RR 61CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key