1 Response_reg#1
4-115 aa · 112 aa · 46.9% of protein
Raw token
Response_reg:4:0.00000000000231:115:118:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
M72_RS05575
Response regulator LytTR family
Roseburia faecis · GCF_001406815
ClassRRTypeLytTRLength239 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001406815#M72_RS05575Stable P2CS identifier used across views.
GenomeGCF_001406815Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length239 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage197 / 239 aa (82.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa239 aa
Domain-by-domain annotation2 items
2 LytTR#2
143-227 aa · 85 aa · 35.6% of protein
Raw token
LytTR:143:0.00000000000121:227:90:98- Raw architecture: Response_reg:4:0.00000000000231:115:118:111#LytTR:143:0.00000000000121:227:90:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001406815::NZ_CVRR01000011.1::G00026
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span39763-40482Genomic interval covered by the local TCS group.
Identifiers
Old locus tagM72_25791RefSeq proteinWP_022045048.1
Context group ID
GCF_001406815::NZ_CVRR01000011.1::G00026Context members
M72_RS05575
Partner locus tags
M72_RS05575
Partner old locus tags
M72_25791
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_022045048.1Primary protein accession used for annex mappings.
UniProt accessionA0A0M6WKK4Primary UniProt accession resolved in the annex database.
UniProt IDA0A0M6WKK4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagM72_RS05575Primary locus identifier stored in the genes table.
Old locus tagM72_25791Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CVRR01000011.1Sequence record reported by the local genomic context database.
Genomic interval39 763-40 482 nt720 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span39 763-40 482 ntGCF_001406815::NZ_CVRR01000011.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001406815::NZ_CVRR01000011.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CVRR01000011.1All displayed genes belong to this local TCS context.
Neighborhood span39 763-40 482 nt720 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
39 763 nt40 482 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
M72_RS05575GCF_001406815#M72_RS05575
RRLytTRCurrent focus
39 763-40 482 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406815#M72_RS05575The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0908922
Simplified PFAM architecture for RROC_0908922
PFAM domain coverage: 200 / 239 aa (83.7%)
1 aa239 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-116] | LytTR[143-229]
- Domain count: 2
- Matched identifier: RROC_0908922
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; LytTR 143-229 ; LytTR 143-229
Cluster members and taxonomy
Representative gene: GCF_001406815#M72_RS05575
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 301 302 · GCF_001406815
AssemblyM72 · Contighaploid
Genome composition3 334 694 bp · 43,0% GCRoseburia faecis
Signal transduction countsGenes 110 · HK 47 · RR 61CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key