1 Response_reg#1
9-117 aa · 109 aa · 47.2% of protein
Raw token
Response_reg:9:1.08e-28:117:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
M72_RS04325
Response regulator OmpR family
Roseburia faecis · GCF_001406815
ClassRRTypeOmpRLength231 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001406815#M72_RS04325Stable P2CS identifier used across views.
GenomeGCF_001406815Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length231 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 231 aa (79.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa231 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
156-229 aa · 74 aa · 32.0% of protein
Raw token
Trans_reg_C:156:1.07e-23:229:78:77- Raw architecture: Response_reg:9:1.08e-28:117:110:111#Trans_reg_C:156:1.07e-23:229:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001406815::NZ_CVRR01000008.1::G00023
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span49311-50938Genomic interval covered by the local TCS group.
Identifiers
Old locus tagM72_23281RefSeq proteinWP_082413777.1
Context group ID
GCF_001406815::NZ_CVRR01000008.1::G00023Context members
M72_RS04325M72_RS04330
Partner locus tags
M72_RS04325M72_RS04330
Partner old locus tags
M72_23281M72_23291
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_082413777.1Primary protein accession used for annex mappings.
UniProt accessionA0A0M6WGV5Primary UniProt accession resolved in the annex database.
UniProt IDA0A0M6WGV5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagM72_RS04325Primary locus identifier stored in the genes table.
Old locus tagM72_23281Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CVRR01000008.1Sequence record reported by the local genomic context database.
Genomic interval49 311-50 006 nt696 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span49 311-50 938 ntGCF_001406815::NZ_CVRR01000008.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001406815::NZ_CVRR01000008.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CVRR01000008.1All displayed genes belong to this local TCS context.
Neighborhood span49 311-50 938 nt1 628 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
49 311 nt50 938 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
M72_RS04325GCF_001406815#M72_RS04325
RROmpRCurrent focus
49 311-50 006 nt · Forward (+)
M72_RS04330GCF_001406815#M72_RS04330
HKClassic
49 994-50 938 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406815#M72_RS04325The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1162823
Simplified PFAM architecture for RROC_1162823
PFAM domain coverage: 181 / 231 aa (78.4%)
1 aa231 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[9-116] | Trans_reg_C[156-228]
- Domain count: 2
- Matched identifier: RROC_1162823
- Positioned domains: Response_reg 9-116 ; Response_reg 9-116 ; Trans_reg_C 156-228 ; Trans_reg_C 156-228
Cluster members and taxonomy
Representative gene: GCF_001406815#M72_RS04325
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 301 302 · GCF_001406815
AssemblyM72 · Contighaploid
Genome composition3 334 694 bp · 43,0% GCRoseburia faecis
Signal transduction countsGenes 110 · HK 47 · RR 61CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key